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6 protocols using mir 30a 5p mimic

1

Transfection of Lovo cells for XIST, miR-30a-5p, and ROR1 modulation

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Cells at the density of 5 × 104/well were inoculated into 24‐well plates, with the culture medium free from antibiotics. When cells grew to 70% confluence, pcDNA‐XIST (Genechem, Shanghai, China), si‐XIST‐1 (sense: 5′‐GCAAAUGAAAGCUACCAAU‐3′, antisense: 5′‐AUUGGUAGCUUUCAUUUGC‐3′, Genechem, Shanghai, China), si‐XIST‐2 (sense: 5′‐GCACAAUAUCUUUGAACUA‐3′, antisense: 5′‐UAGUUCAAAGAUAUUGUGC‐3′, Genechem, Shanghai, China), si‐XIST‐3 (sense: 5′‐CUAGAAUCCUAAAGGCAAA3′, antisense: 5′UUUGCCUUUAGGAUUCUAG3′, Genechem, Shanghai, China), miR‐30a‐5p mimic (sense: 5′‐UGUAAACAUCCUCGACUGGAAG‐3′, antisense: 5′‐CUUCCAGUCGAGGAUGUUUACA‐3′, Ribobio, Guangzhou, China), miR‐30a‐5p inhibitor (sense: 5′‐CUUCCAGUCGAGGAUGUUUACA‐3′, anti‐sense: 5′‐UGUAAACAUCCUCGACUGGAAG‐3′, Ribobio, Guangzhou, China), pCMV6‐ROR1 (OriGene Technologies, Rockville, MD, USA), and si‐ROR1 (sense: 5′‐AUCCGGAUUGGAAUUCCCAUG‐3′, antisense: 5′‐CAUGGGAAUUCCAAUCCGGAU‐3′; sense: 5′‐CUUUACUAGGAGACGCCAAUA‐3′, anti‐sense: 5′‐UAUUGGCGUCUCCUAGUAAAG‐3′, Open Biosystem, Huntsville, AL, USA) were transfected into Lovo cells, according to the instructions of Lipofectamine3000 (Invitrogen, Carlsbad, CA, USA).
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2

Modulating NORAD and RAB11A Expression

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The gene-overexpression vectors (pcDNA-NORAD and pcDNA-RAB11A) and the control vector (pcDNA) were purchased from GenScript Biotech Corp. (Nanjing, China). The small interfering RNAs against NORAD (NORAD siRNA), RAB11A (RAB11A siRNA) and negative control siRNAs (NC siRNAs) were designed, synthesized and validated by Thermo Fisher Scientific (Waltham, MA, USA). MiR-30a-5p mimic, miR-30a-5p inhibitor and the corresponding negative control (NC mimic and NC inhibitor) were purchased from RiboBio (Guangzhou, China). All these plasmids and oligonucleotides were transfected into PC-3 or LNCap cells by using lipofectamine 2000 transfection reagent (Invitrogen, Carlsbad, USA) under the suggestion of the manufacturer. At 48 h after transfection, cells were harvested for further study.
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3

CLCF1 regulation by miR-30a-5p

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The lentiviral vector pLVX-3×Flag-Puro was used to clone the cDNA of human CLCF1 to obtain the pLVX-CLCF1-3×Flag-Puro plasmid. The pmirGLO dual-luciferase reporter from Promega was used to clone the human CLCF1 3′-UTR to obtain the wild-type pmirGLO-CLCF1-3′-UTR reporter. In the mutant reporter pmirGLO-CLCF1-3′-UTR-mut, mutations of seven nucleotides in the CLCF1 3′-UTR that correspond to the miR-30a-5p seed sequences were performed. DNA sequencing was performed to confirm all constructs. The agomiR-30a-5p, miR-30a-5p mimics, CLCF1 siRNA and their respective control RNAs and anti-miR-30a-5p reagents were procured (RiboBio, China).
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4

Molecular Mechanisms of Autophagy Regulation

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A MYOCD-targeting shRNA plasmid (shMYOCD), a scrambled control shRNA plasmid (shControl), a pcDNA3.1-MYOCD expression plasmid (MYOCD) and an empty vector pcDNA3.1 (pcDNA3.1) have been described previously [40 (link), 41 (link)]. The GFP-LC3 plasmid was a gift from Congcong He (Northwestern University, Chicago, USA). Plasmid DNA transfection was carried out using X-tremeGENE HP DNA transfection reagent (Roche, Basel, Switzerland) according to the manufacturer’s instructions. MiR-30a-5p mimics, inhibitors and miRNA negative controls were purchased from RiboBio (RiboBio, Guangzhou, China). MiRNA transfection was performed using riboFect™ CP reagent according to the manufacturer’s instructions.
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5

Constructing Plasmids to Modulate circFAT1

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The sense sequence of sh‐circFAT1 (GAGAAAGATTCCCGACAGTTA) and antisense sequence were inserted into the pBLOCK‐iT 6‐DEST vectors (Thermo) to construct the sh‐circFAT1 plasmids. miR‐30a‐5p mimics (3′‐GAAAGGUCAGCUCCUACAAAUGU‐5′) and miR‐30a‐5p inhibitors (3′‐CTTCCUGTCGUGGUTGTTTUCU‐5′) were purchased from RiboBio. The OE‐circFAT1 and OE‐REEP3 plasmids were constructed using pLO‐ciR vectors (Geneseed) and pcDNA3.1 vectors, respectively. All plasmids transfected into Huh7 and Hep3B cells by using Lipofectamine 3000 (Invitrogen).
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6

Gastric Cancer Cell Lines: Functional Assays

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Human GC cell lines (MKN-45, SGC-7901, HGC-27, NCI-N87, AGS, BGC823, and MGC-803) and normal gastric mucosal epithelial cell line (GES-1) were purchased from the American Type Culture Collection (ATCC, Rockville, MD) and cultured in Dulbecco’s modified Eagle medium (DMEM; 4.5 g/L D-glucose) supplemented with 10% FBS (Invitrogen, Grand Island, NY) and 1% antibiotic/antimycotic in a humidified incubator at 37 °C containing 5% CO2.
siRNAs targeting lncRNA DLEU2 (si-DLEU2) were designed and synthesized (RiboBio, Guangzhou, China). The sequence of si-DLEU2 was used as follows: 5'-CUCAUUGAAUACUAUCAAAAAGGAA-3'. miR-30a-5p mimics were purchased from RiboBio (Guangzhou, China). The cDNA of DLEU2 and ETS2 was synthesized by GENEWIZ and cloned into the pcDNA3.1 expression vector, respectively (GenePharma, Shanghai, China). si-DLEU2, miR-30a-5p mimics, and pcDNA3.1 vectors were transfected using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA), according to the manufacturer’s instructions.
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