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Mini protean 3 electrophoresis cell

Manufactured by Bio-Rad
Sourced in United States

The Mini-PROTEAN 3 electrophoresis cell is a compact and versatile laboratory equipment designed for performing gel electrophoresis. It enables the separation and analysis of biomolecules, such as proteins and nucleic acids, based on their size and charge. The cell features a simple and intuitive setup, allowing users to efficiently conduct electrophoresis experiments.

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16 protocols using mini protean 3 electrophoresis cell

1

Quantitative Western Blot Analysis

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Western blot analysis was performed as described
previously (29 (link)). Briefly, proteins were separated by 12%
SDS-PAGE electrophoresis at 100 V for 2 hours using
a Mini-PROTEAN 3 electrophoresis cell (Bio-Rad,
Hercules, CA, USA) then transferred to a polyvinylidene
difluoride (PVDF) membrane by wet blotting (Bio-Rad,
Hercules, CA, USA). Membranes were blocked for 1 hour
using 5% bovine serum albumin (BSA, Sigma- Aldrich,
USA), and incubated for 1.5 hours at room temperature
(RT) (30 ) with the following primary antibodies [anti-
His6 (provided with Ni-NTA Fast Start Kit (Qiagen, USA)
1:5000]. Membranes were rinsed 3 times (15 minutes
each) with Phosphate-buffered saline Tween-20 (PBST,
0.05%) and incubated with the peroxidase-conjugated
secondary antibody [anti-mouse (Millipore, 1:6000)],
for 1 hour at RT. The blots were visualized using Sigma
detection reagents (Sigma- Aldrich, USA) and films were
scanned by a densitometer (GS-800, Bio-Rad, USA).
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2

Quantification of NF-κB Expression

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The expression of NF-κB was analyzed by Western blotting. We separated 50 μg protein on 6.25% sodium dodecyl sulfate–polyacrylamide gels (SDS–PAGE) using the mini-PROTEAN 3 electrophoresis cell (Bio-Rad Laboratories, Inc., Hercules, California, USA) according to the manufacturer’s protocol. After being transferred to a nitrocellulose membrane, the proteins were blocked for 1 h at room temperature with 5% non-fat dry milk in Tris-buffered saline containing 0.05% Tween 20 (TBST). The membrane was then incubated with anti- NF-κB antibody for 1 h, washed four times with TBST, and incubated for 1 h with a peroxidase-conjugated secondary antibody (1:1000). After washing the membrane four times with TBST buffer, the blot was developed using ECL chemiluminescence reagents (Millipore immobilonTM HRP Substrate) and imaged. The immunoreactive bands on the autoradiography films were scanned with a calibrated densitometer ChemiDocTM XRS+ (Bio–Rad imaging System) and quantified using QuantityOne imaging software (Bio–Rad Laboratories, Hercules, CA). Equal loading of proteins onto the gel was confirmed by the immunodetection of GAPDH.
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3

Quantification of Cardiac Transcription Factors

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Nuclear erythroid factor-2 (Nrf-2), NF-κB, and pNF-κB total and phosphorylated (NF-κB and pNF-κB, respectively), collagen I, collagen III, and caspase-3 expression were determined. LV samples were extracted using radioimmunoprecipitation assay buffer or nuclear extraction buffer. Protein content was quantified using the Bradford method [43 (link)], and samples containing 50 μg of protein were separated by electrophoresis using a Mini-Protean 3 Electrophoresis Cell (Bio-Rad, Hercules, CA, USA) system and transferred to a nitrocellulose membrane. The membrane was blocked and incubated with primary antibodies. The membrane was then washed with TBS and Tween 20 and incubated with the appropriate secondary peroxidase-conjugated antibody. A SuperSignal® West Pico Chemiluminescent Substrate (Pierce Protein Research Products, Rockford, IL, USA) was used to detect bound antibodies. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mouse monoclonal (Santa Cruz Biotechnology Inc., Europe) was used for normalization.
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4

Comparative Protein Profiling of F. psychrophilum Strains

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Protein electrophoresis followed Laemmli (1970) with some modifications. Prior to electrophoresis 2 ml cultures of parent and passaged strains of F. psychrophilum (OD595 0.6) were centrifuged, cells were resuspended in 0.5 ml PBS and diluted 1:2 in sample buffer containing a reducing agent (100 mM β-mercaptoethanol) and boiled for 5 min. Proteins from bacterial whole-cell lysate were separated using pre-cast Any-kD polyacrylamide gels (Bio-Rad). Gels were used in a Mini-PROTEAN 3 electrophoresis cell (Bio-Rad) at 120 V for 70 min. Proteins were stained with Coomassie Blue and Precision Plus protein standards (Bio-Rad) were used to estimate the molecular mass of proteins. Analysis of carbohydrate extractions was conducted according to the method of LaFrentz and co-workers [13 (link)] and LPS fractions were silver stained with Pierce Silver Stain Kit according to manufacturer’s instruction (Thermo Scientific, USA). ChemiDoc XRS system and Image Lab 4.1 software were used for visualization (Bio-Rad).
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5

Western Blot Protein Analysis

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Proteins were separated by 12% SDS-PAGE electrophoresis at 100 V for 2 hr using a Mini-PROTEAN 3 electrophoresis cell (Bio-Rad) and transferred to a PVDF membrane by wet blotting (Bio-Rad). Membranes were blocked for 1 hr with 5% BSA and incubated for 1.5 hr at room temperature with appropriate primary antibodies. At the end of the incubation period, membranes were rinsed and incubated with anti-rabbit secondary antibody (Sigma-Aldrich, #A0545) conjugated with horseradish peroxidase. Blots were visualized with ECL substrate (GE) with a densitometer (GS-800, Bio-Rad).
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6

SDS-PAGE and Western Blot Analysis

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We performed sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) under denaturing conditions (8% and 12% SDS-PAGE), according to the method of Laemmli [16 (link)]. We used a Mini-Protean 3 electrophoresis cell for the separation of proteins (Bio-Rad Laboratories, Richmond, CA, USA). Proteins were electrophoresed at 120 V, and gels stained with 0.25% Coomassie Brilliant Blue G-250 (GE Healthcare, Waukesha, WI, USA). Pre-stained standards (Fermentas, Burlington, Ontario, CA) were used for estimating the molecular weight of proteins in each sample. Following electrophoresis, proteins were transferred to Hybond-C Extra nitrocellulose membranes (GE Healthcare). We detected β-1,3-glucanosyltransferase and 1,3-β-D-glucan synthase by incubating membranes with the relevant specific murine antibodies (1 mg/mL) overnight. Membranes were then incubated for 1 h with horseradish peroxidase-conjugated anti-mouse IgG (diluted 1:1000 in blocking buffer). The reaction was revealed using the peroxidase substrate ECL (Enhanced Chemo-Luminescence, GE Healthcare).
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7

SDS-PAGE and Immunoblot Analysis

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Example 5

Proteins were denatured by boiling 40 μl supernatant samples for five minutes in 10 μl sodium dodecyl sulfate (SDS) sample buffer resulting in a final buffer concentration of 0.4% (vol/vol) SDS, 62.5 mM Tris-HCl (pH 8.2), 10% glycerol, 5 mM EDTA and 0.01% (wt/vol) bromophenol blue. A 15 μl aliquot of each denatured sample was fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) on 12% Tris-HCl precast gels (BioRad) carried out in a Mini-PROTEAN 3 electrophoresis cell (BioRad) for 35 min at 200 V. Proteins were then blotted onto 0.45 μm nitrocellulose membranes (GE Osmonics, Minnetonka, Minn.) for 85 min at 120 V using an electroblot Mini Trans-Blot transfer cell (BioRad). Immunoblot analysis was then performed according to the procedure described elsewhere (Huang et al., 2001) with the only alteration being the vendor of the secondary antibody used in this study (Southern Biotechnology, Birmingham, Ala.). Chemiluminescence detection was used for the CMV CP immunoblot. Human AAT (Calbiochem, La Jolla, Calif.) was used as the standard for all assays performed.

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8

Western Blot Analysis of Pulmonary Proteins

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Pulmonary tissue was homogenized with lysis buffer, resolved on 10% SDS-PAGE using a Mini-Protean 3 Electrophoresis Cell (Bio-Rad) at 150 V, 100 mA for 1 h, and transferred to polyvinylidene fluoride membrane (Millipore, HVLP04700). The membrane was washed and blocked with Tris-buffered saline (TBS) containing 0.1% Tween-20 and 10% nonfat dry milk before overnight incubation with appropriate primary antibodies (integrin β3 (SJ1909/NBP2-67416, Novus, USA), PKM2 (AF7244, R&D, USA), collagen-I α-1 (COL1A1, 72026S, CST, USA), α-smooth muscle actin (α-SMA) (CST, 19245), Lactate dehydrogenase (LDHA) (3582, CST, USA) and β-actin (8457, CST, USA)) in blocking buffer at 4 °C. The secondary antibodies were then used with 1:6000 goat anti-mouse IgG-Horseradish Peroxidase (HRP) for PKM2, or 1:6000 goat anti-rabbit IgG HRP for integrin β3, COL1A1, α-SMA and β-actin, in blocking buffer for 1 hour at room temperature. The bands were visualized using enhanced chemiluminescence (Amersham ECL Western Blotting Detection Reagents, GE Healthcare, Baie d'Urfe, QC, Canada).
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9

SDS-PAGE Protein and Glycoprotein Analysis

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SDS-PAGE for the detection of proteins and glycoproteins was performed according to Laemmli [23 (link)] in a Mini-Protean III electrophoresis cell (Bio-Rad Laboratories, Hercules, CA, USA). Samples were prepared by precipitating proteins and glycoproteins from 400 µL of wine using four volumes of cold ethanol. Pellets were collected by centrifugation (13,000× g, 15 min, 4 °C) and washed with 1 mL of pure ethanol before being dissolved in 25 μL of Laemmli sample buffer (Bio-Rad) prepared with 5% (v/v) 2-mercaptoethanol as the reducing agent. The samples were then heated at 95 °C in a dry bath (H2O3–100C, Coyote Bioscience Co., Ltd., Beijing, China) for 5 min. Then, 10 μL of each sample were loaded on Mini-Protean TGX stain-free precast gels 8–16% (Bio-Rad Laboratories). The Precision Plus Protein Standards broad range (range 10–250 kDa, Bio-Rad Laboratories) was used. Proteins were stained by using the silver stain procedure [24 (link)] and periodic acid–Schiff (PAS) for glycoprotein quantification [25 (link)]. Images of the gels were acquired at 300 dpi resolution with a ChemiDoc™ XRS molecular imager (Bio-Rad Laboratories).
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10

Affinity Purification of Bacterial Enzyme

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The promoter Pspm was commercially modified with biotin at its 5′ end and immobilized on streptavidin beads (Invitrogen). P. putida S16 was cultured overnight in citrate medium, and the harvested cells were resuspended with PBS and disrupted by sonication in an ice-water bath. The insoluble material was removed by centrifugation (12,000 × g for 30 min). The crude enzyme preparation and the treated beads were then mixed, followed by incubation at room temperature for 30 min. Magnets were used to collect the beads, and protein was released from the beads by boiling in a water bath for 5 min. SDS-PAGE was performed for the detection of the sample using a 12% gel in a MiniProtean III electrophoresis cell (Bio–Rad). The single bands were cut and characterized by matrix-assisted laser desorption ionization--time of flight mass spectrometry.
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