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13 protocols using dmp 1

1

Immunofluorescence Characterization of hDPSCs

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To evaluate antigen expression, immunofluorescence staining was performed after 5 days of culturing. hDPSCs were grown on round, sterilized glass cover slips (12 mm). The cells were characterized for the markers of differentiated hDPSCs (DMP-1 and β-catenin; Abcam). Briefly, the cells were washed with cold Dulbecco’s phosphate-buffered saline (PBS), fixed in 4% paraformaldehyde for 10 min, and washed twice in PBS with 0.1% Triton X-100 (PBS-T) for 5 min. Afterward, the cells were incubated with primary antibodies diluted in 1% bovine serum albumin (primary antibodies; DMP-1 and β-catenin, Abcam) overnight and then with appropriate secondary antibodies for 2 h. After washing twice with PBS-T, the nuclei were stained with DAPI (0.4 µg/mL) at room temperature for 2 min in the dark. The cells were washed twice with PBS-T, mounted on clean slide glasses with Mount Fluor (BioCyc, Potsdam, Germany), and stored at 4 °C. Representative images were captured using a Nikon Eclipse Ti microscope.
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2

Western Blot Analysis of Odontogenic Proteins

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The cultured cells were extracted by RIPA (Radio Immunoprecipitation Assay) ordinary type reagent (Vazyme), which is a traditional cell tissue lysis buffer to gain proteins for western and IP experiments. Then, 30 μg of each protein was loaded to each lane, fractionated by 10% SDS-PAGE, transferred onto PVDF membranes and probed with the primary antibody of DMP1 and DSPP (Abcam, Cambridge, United Kingdom) as a target and GAPDH (CST, Boston, MA, United States) as an internal control at 4°C overnight. The secondary antibodies were added for 2 h. The blots were visualized through enhanced chemiluminescence and autoradiography.
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3

Proteomic Analysis of Osteocyte Secretome

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Western blot analysis was conducted using a previously described protocol.39 (link) We used antibodies against ANXA1, β-catenin, caspase 3, Lrp5, Lrp6, Runx2, Sclerostin, Snail, TGFβ, NFATc1, cathepsin K (all from Cell Signaling, Danvers, MA, USA), DMP1, ANXA6, CXCL5 (all from Abcam, Cambridge, MA, USA), M-CSF, MMP9, OPN, TPM4 (all from Santa Cruz, Dallas, TX, USA), WISP1 (R&D systems, Minneapolis, MN, USA), β-actin (Sigma, Saint Louis, MO, USA), LIMA1, Trail (both from Novus, Centennial, CO, USA), p53, CXCL1 (both from Invitrogen, Carlsbad, California, USA), and DSP (ProteinTech, Rosemont, IL, USA). The expression levels of Sclerostin and Lrp5 in CM were detected by ELISA (My BioSource, San Diego, CA, USA). Proteins isolated from A5 osteocyte CM, Y4 osteocyte CM, and osteoclast control CM (RAW264.7 cells) were analyzed with an HF Hybrid Quadrupole Orbitrap mass spectrometer. Among the 549 identified proteins, 49 proteins had higher expression levels in A5 CM than in Y4 CM and control CM. Among these proteins, 11 (p53; SPARC = osteonectin; TPM1, TPM4 = tropomyosin 1 and 4; ANXA1, ANXA6 = annexin A1 and A6; FMOD = fibromodulin; OGN = osteoglycin; DSP = desmoplakin; AHNAK = desmoyokin; and LIMA1 = LIM domain actin-binding protein 1) were identified as potential tumor suppressors.
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4

Immunohistochemical Analysis of Mouse Molar Development

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Mouse mandibular molars were fixed in 4% paraformaldehyde for 48 h and then decalcified in 10% ethylenediaminetetraacetic acid at 4 °C for 1 month. A series of gradient ethanol solutions was used for tissue dehydration, and then, the tissues were embedded in paraffin. Four-micron-thick specimens from first molars were obtained for hematoxylin and eosin (H&E) staining and immunofluorescence, which were performed as previously described [14 (link)]. For immunofluorescence, the sections were stained with antibodies against the following proteins: DMP1 (Abcam, UK), COL1 (Proteintech, China), CD63 (Abcam, UK) and Alix (Abcam, UK). The immunofluorescence images were taken by Leica STELLARIS 5 (72 dpi × 72 dpi), LAS X software.
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5

Osteogenic Differentiation Signaling Pathway

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SCAPs treated with EGCG, LDN193189 (Sigma-Aldrich), or recombinant human BMP2 (PeproTech, Rocky Hill, NJ) at different time points were lysed in lysis buffer (Beyotime), and the protease inhibitor cocktail (MCE, Shanghai, China) was added. After centrifuging at 12,000 rpm for 10 min at 4 °C, total protein was collected from the lytic cells. The concentrations of proteins were measured using a BCA Kit (Thermo). Equal amounts of proteins were loaded onto 10% SDS-polyacrylamide gel. The samples were separated by electrophoresis and then transferred onto PVDF membranes (Roche Diagnostics GmbH, Germany). The following primary antibodies were used: DSPP (Novus, Centennial, Colorado; Cat#NBP1-91612, 1:1000), DMP-1 (Abcam, Cambridge, UK; Cat#103203, 1:1000), p-Smad1/5/9 (Cell Signaling Technology; Cat#13820, 1:1000), β-actin (MBL, Tokyo, Japan; Cat#PM053-7, 1:6000), and BMP2 (Abcam; Cat#6285, 1:1000). The target bands were quantified using Image J and normalized to β-actin.
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6

ECM Scaffold Protein Characterization

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The presence of various ECM proteins within the scaffolds was evaluated by immunohistochemistry. Briefly, the control (pulp ECM) and the dual ECM scaffolds were fixed in neutral buffered 4% formalin, embedded in paraffin and sectioned into 5 μm thick sections. The sections were then fluorescently immunostained using the following antibodies: rabbit polyclonal anti fibronectin (1/500, Abcam), mouse monoclonal anti dentin matrix protein 1 (DMP1, 1/1000, kind gift from Dr. Anne George, UIC), rabbit polyclonal anti Dentin phosphophoryn (DPP, 1/100, kind gift from Dr. Anne George, UIC), rabbit polyclonal anti Dentin sialoprotein (DSP, 1/100, kind gift from Dr. Anne George), rabbit polyclonal anti transforming growth factor beta 1 (TGFβ1, 1/100, Abcam), mouse monoclonal anti bone morphogenetic protein 2 (BMP2, 1/100, Abcam), mouse monoclonal anti von Willebrand factor (vWF, 1/100, Abcam), mouse monoclonal anti vascular endothelial growth factor (VEGF, 1/100, Abcam), rabbit polyclonal anti basic fibroblast growth factor (bFGF, 1/100, Abcam) followed by TRITC conjugated anti rabbit and FITC conjugated anti mouse secondary antibodies as required.
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7

Quantifying Dental Extracellular Matrix Proteins

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Protein samples and total RNAs were, respectively, extracted in accordance with the standard protocols. Quantitative reverse-transcription polymerase chain reaction (qRT-PCR) and western blot analysis were performed as we described previously.20 (link) Primer sequences of dentin sialophosphoprotein (DSPP), dentin matrix protein-1 (DMP-1), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) are provided in Table 1. The protein expression of DMP-1 (1:4000; Abcam) and DSPP (1:2000; Santa Cruz Biotechnology, Santa Cruz, CA) were also detected. β-Actin (1:8000; Santa Cruz) was used as an internal reference. Quantitative data for protein expression were evaluated based on the intensity of protein bands.
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8

Lineage-Negative Cell Isolation and Analysis

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Antibodies for lineage negative (Lin) selection (B220, Gr-1, TER-119, CD4 and CD8), for sorting (anti-Sca-1-PE, Anti-c-kit-APC, biotin-conjugated lineage panel antibodies (B220, Gr-1, CD3ε, TER-119) and streptavidin-conjugated APC-Cy-7) and for multilineage engraftment analysis (PE conjugated anti-B220, Thy-1.2, Mac-1 and Gr-1) along with the appropriate isotypes were purchased from BD Pharmingen. Sheep anti-rat IgG Dynabeads® were purchased from Invitrogen. Biotinylated murine anti-CD34 was purchased from eBiosciences. CD105, CD106, CD90, CD39, CD11b were from Biolegend. Murine GFP, CD45, ASMA, Vimentin, DMP-1, Runx-2, periostin, BSP and ALP antibodies were purchased from Abcam. Osteocalcin (OCN) antibody was from Takara Bio (Clontech). DSPP antibody was from Santa Cruz Biotechnology. All secondary antibodies were from Jackson ImmunoResearch Laboratories. CD45-APC for flow cytometry was purchased from eBiosciences.
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9

Western Blot Analysis of Dental Proteins

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Cells were lysed in RIPA buffer (Beyotime, China) combined with a cocktail of protease inhibitors (Thermo Scientific, Rockford, IL). Equal amounts of proteins (25 μg) of different groups were separated by 10% SDS-PAGE and transferred to 0.45-μm PVDF membranes (Millipore, USA). The membrane was first blocked with 5% BSA for 1 h at room temperature and incubated at 4 °C overnight with primary antibodies: GAPDH (1:1000; Abcam, Cambridge, UK), RUNX2(1:1000; Cell Signaling Technology, Danvers, MA), DSPP (1:1000; Abcam, Cambridge, UK), and DMP-1 (1:1000; Abcam, Cambridge, UK). After washed with Tris-buffer saline containing 0.05% Tween 20 (TBST) for three times and 5 min each, the membranes were incubated with secondary antibodies labeled with horseradish peroxidase (1:3000; Cell Signaling Technology, Danvers, MA) at room temperature for 1 h. Blots were visualized using ECL Western Blotting Substrate.
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10

Histological Analysis of Tumor Metastases

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Following euthanasia, primary tumor, lung, liver, and spleen were isolated from all animals, formalin fixed, and paraffin embedded. Organs were sectioned on 3 separate and distinct planes before undergoing hematoxylin and eosin (H&E) staining. Each organ section was then reviewed by a board-certified pathologist (R.M.) for the presence of metastases.
Primary tumors from subcutaneous and orthotopically challenged mice were stained for H&E, dentin matrix phosphoprotein 1 (DMP1; Abcam, Cambridge, MA; 1:100), osteocalcin (OC; Millipore, Billerica, MA; 1:500), vimentin (Bioss, Woburn, MA; 1:200), and pan-cytokeratin (Bioss; 1:200). Antibody staining was accomplished using an intelliPATH FLX (Biocare Medical; Concord, CA) automatic staining system. Reveal decloaker (Biocare Medical) was used for antibody retrieval followed by rodent block M (Biocare Medical) to block non-specific binding. Primary antibodies were applied at dilutions described above. Secondary anti-rabbit antibody conjugated to horse radish peroxidase (HRP) was utilized and followed by staining with DAB followed by hematoxylin counterstaining (Biocare Medical). Images were captured by an Olympus BX41 microscope with matching software.
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