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2 protocols using 3 o acetyl n4 benzoyl 2 deoxycytidine

1

Cytosine Nucleoside Derivatives for Enzymatic Studies

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Capecitabine, cytidine, cytosine, N4-acetylcytosine, and cytosine β-d-arabinofuranoside were obtained from Sigma-Aldrich (Germany). N4-acetyl-2′-deoxy-5′-O-DMT-cytidine, N4-benzoylcytidine, N4-benzoyl-5-methylcytidine, 2′-deoxy-5-hydroxycytidine, 2′-deoxy-5-hydroxymethylcytidine, 5-hydroxymethylcytidine, 2′-deoxy-5-propynylcytidine, pseudoisocytidine, isocytidine, 5-fluorocytidine, 2-thiocytidine, 2′-deoxy-5-methylcytidine, 2′,5′-dideoxycytidine, 2′,3′-dideoxycytidine, 2′-O-methylcytidine, 3′-azido-N4-benzoyl-2′,3′-dideoxycytidine, and N3-methyl-2′-deoxy cytidine were purchased from Carbosynth (UK); 3′-O-levulinoyl-N4-benzoyl-2′-deoxycytidine, 5′-O-levulinoyl-N4-benzoyl-2′-deoxycytidine, 3′-O-acetyl-N4-benzoyl-2′-deoxycytidine, S4-n-propylthiouridine-5′-triphosphate, S4-iso-propylthiouridine-5′-triphosphate, and S4-iso-butylthiouridine-5′-triphosphate were obtained from Jena Bioscience. S4-n-propylthiouridine-5′-triphosphate, S4-iso-propylthiouridine-5′-triphosphate, and S4-iso-butylthiouridine-5′-triphosphate were dephosphorylated using FastAP alkaline phosphatase (Thermo Fisher Scientific) before treatment with CDAs. N4-acetylcytidine, N4-acetyl-2′-deoxycytidine, N4-benzoyl-2′-deoxycytidine, and N4-isobutyryl-2′-deoxycytidine were purchased from Combi-Blocks (USA), and N4-benzoylcytosine was purchased from Bide Pharmatech Ltd.
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2

Cloning and Protein Expression Protocol

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Restriction endonucleases, HindIII, BamHI, PstI, Phusion DNA polymerase, aLICator™ LIC Cloning and Expression System Kit 3, PageRulerTM Prestained Protein Ladder were purchased from Thermo Fisher Scientific, Vilnius, Lithuania, Pierce™ Coomassie Plus (Bradford, UK) Assay Reagent and HisPur™ Ni‐NTA spin column were purchased from Thermo Fisher Scientific, Rockford, IL. pET21a Vector was purchased from Novagen (Madison, USA). Nutrient medium were purchased Roth, Germany. pNP‐acyl esters, tributyrin, β‐d‐glucose pentaacetate, β‐d‐galactose pentaacetate, and uridine were purchased from Sigma‐Aldrich. ‘ZR Soil Microbe DNA MidiPrep™’ was purchased from Zymo Research, Freiburg, Germany. Nitrocefin was purchased from Oxoid, UK. 3′‐O‐benzoyl‐2′‐deoxyuridine were purchased from Carbosynth, UK. 3′‐O‐acetyl‐2′‐deoxyuridine, 3′‐O‐acetyl‐N4‐benzoyl‐2′‐deoxycytidine, 3′‐O‐levulinyl‐N4‐benzoyl‐2′‐deocytidine, and 5′‐O‐levulinyl‐N4‐benzoyl‐2′‐deocytidine were purchased from Jena Bioscience, Jena, Germany.
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