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Bugle loop mirna qpcr kit

Manufactured by RiboBio

The Bugle-Loop™ miRNA qPCR kit is a laboratory tool designed for the quantitative real-time PCR (qPCR) detection and analysis of microRNA (miRNA) expression levels. The kit utilizes a proprietary loop primer technology to facilitate the specific amplification and detection of mature miRNA sequences.

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3 protocols using bugle loop mirna qpcr kit

1

Quantification of miR-125b and Associated Targets

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TRIzol® reagent (Tiangen Biotech Co., Ltd.) was used to isolate total RNA. A total of 2 µg of each RNA sample was reverse transcribed into cDNA using FastQuant RT Super mix (Tiangen Biotech Co., Ltd.). qPCR was performed on a Bio-Rad MiniOpticon Real-Time PCR system (Bio-Rad Laboratories, Inc.) using a SYBR Green PCR Master mix (Tiangen Biotech Co., Ltd.). A Bugle-Loop™ miRNA qPCR kit (Guangzhou RiboBio Co., Ltd.) was used to quantify miR-125b and U6. Hsa-mir-125b-1_1_PR miScript Precursor Assay (Qiagen GmbH) was used for quantification of precursor miR-125b. The primer sequences were as follows: GAPDH forward, 5′-AGCCACAATCGCTCAGACAC-3′ and reverse, 5′-GCCCAATACGACCAAATCC-3′; Ago2 forward, 5′-CCTCCCATGTTTACAAGTCG-3′ and reverse, 5′-TCTTTGTCCTGCCACAATG-3′; STAT3 forward, 5′-CATATGCGGCCAGCAAAGAA-3′ and reverse, 5′-ATACCTGCTCTGAAGAAACT-3′; GUSB forward, 5′-AGCGTGGAGCAAGACAGTG-3′ and reverse, 5′-TCTGCATAGGGGTAGTGGCT-3′; and Pri-miR-125b forward, 5′-TGAACCTCGAACAGAAATTGCC-3′ and reverse, 5′-TCCACCAAATTTCCAGGATGC-3′.
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2

Reverse Transcription and qPCR Analysis of miRNA and mRNA

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Total RNA was extracted using Trizol reagent (Takara), cDNA was reverse transcribed using PrimeScript™ RT Reagent Kit (Takara), and miR‐148b‐3p and U6 were reverse transcribed using Bugle‐Loop™ miRNA qPCR kit (RiboBio). Expression of RNA was detected using SYBR® PrimeScript™ RT‐PCR Kit (Takara, Japan). β‐actin was used as the internal reference for lncRNA and mRNA, and U6 was used as the internal reference for miRNA. Expression levels were quantitated using the 2‐ΔΔCt method. RiboBio designed and synthesized all miRNA and U6 primers. ABM (Canada) synthesized all other primers used in this study. The primer sequences are listed in Table S1.
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3

Quantifying circKCNN2 and miRNA-520c-3p in HCC

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Trizol reagent (Invitrogen) was applied to extract total RNA from tissue samples and HCC cells. The transcript abundance of circKCNN2 and genes were quantified by using PrimeScript RT Master Mix (Takara, Dalian, China) and TB Green Premix Ex Taq II (Takara), respectively. The Bugle‐Loop™ miRNA qPCR kit (RiboBio) was applied to quantify miRNA‐520c‐3p. Glyceraldehyde‐3‐phosphate dehydrogenase (GAPDH) served as internal reference for the quantification of gene and circRNA while U6 was applied as the internal reference for the quantification of miRNA. All the primers used for RT‐qPCR assays are listed in Table S6. Western blot and IHC assays were conducted as previously described.20 The primary antibodies used in this study were as follows: MBD2 (1:1000, # A301633A, Bethyl, Montgomery, TX), FGFR4 (1:1000, #8562, CST, Danvers, MA), FGF19 (1:1000, #83348, CST), FRS2 (1:1000, #MAB4069, R&D Systems, Minneapolis, MN), and GAPDH (1:1000, #3683s, CST). Western blot analyses were repeated three times. GAPDH was used as the loading control and normalization control. ImageJ software (version 1.51, https://imagej.nih.gov/ij/) was applied to quantify the signal strength of the bands.
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