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19 protocols using femtojet express

1

Targeted Intraspinal rAAV Delivery in Rats

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According to our previous methods [9 (link),31 (link)], rats were intraperitoneally (i.p.) injected with pentobarbital (65 mg/kg) under isoflurane (2%) anesthesia. In brief, we inserted the microcapillary backfilled with rAAV solution into the SDH between Th13 and L1 vertebrae (500 μm lateral from the midline and 250 μm in depth from the surface of the dorsal root entry zone) and microinjected 800 nl rAAV solution (3 × 1012 GC/mL) using FemtoJet Express (Eppendorf, Hamburg, Germany). After microinjection, we slowly removed the inserted microcapillary from the SDH and the skin was sutured with 3–0 silk.
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2

Parental RNAi in Tribolium Beetles

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For parental RNAi in Tribolium, 300-400 female G10011 pupae (at 70-80% pupal development) were injected with dsRNA (2 µg/µl) or injection buffer only (control) using a FemtoJet Express (Eppendorf). Injected pupae were placed on fine wheat flour (type 405) for 24 h at 28°C. Eclosed beetles were added to ∼200 male G10011 beetles and maintained for another 24 h at 28°C. Then, all beetles were collected, placed on fresh fine wheat flour and shifted to 32°C. Eggs were collected for 24 h, aged for an additional 48 h and then fixated for immunostaining. Eggs were collected for eight consecutive days. Pupal injections were performed twice with fragment 1 and once with fragment 2 (see following section).
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3

Bidirectional dsRNA Synthesis and Injection in Beetles

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The templates for the bidirectional in vitro dsRNA synthesis were generated by PCR using a T7 and an SP6 primer with a T7 promoter sequence overhang. The dsRNA was then synthesized by using the T7 Megascript Kit (Ambion, Life Technologies GmbH, Darmstadt, Germany) with the respective PCR fragment as the template. After DNAse treatment and LiCl precipitation, the RNA was annealed by boiling for about 20 min cooling down to room temperature over 3 h. The formation of dsRNA was confirmed by gel electrophoresis and the concentration was adjusted to 3 µg/µL with injection buffer (1.4 mM NaCl, 0.07 mM Na2HPO4, 0.03 mM KH2PO4, 4 mM KCL, and 10% phenol red), using a NanoDrop ND-100 (NanoDrop Technologies, Inc., Wilmington, NC, USA). The mock dsRNA was made from a PCRII vector containing a 427 bp fragment of DsRed (kindly provided by G. Bucher).
For the injection of dsRNA, late pupae were mounted with double sided adhesive tape on an object slide and approximately 0.5 µL of the dsRNA solution was injected into the conjuctivum between the fourth and fifth abdominal segments using a pulled glass capillary coupled to a FemtoJet express (Eppendorf, Hamburg, Germany). The injected pupae were placed in flour filled Petri dishes and stored in an incubator at 30 °C until adult beetles emerged, which were then aged and food-deprived before their use for EAG experiments.
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4

Hindbrain Bacterial Microinjection in Larvae

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Hindbrain ventricle injection of bacteria and soluble reagents were performed under anesthesia with 0.252 g/L tricaine (Sigma, A5040) using a microinjection needle supplied to a FemtoJet Express microinjection unit (Eppendorf), with larval manipulation performed using the VAMP (Takaki et al., 2013 (link)) and (Video online).
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5

Implantation of Schistosome Eggs in Zebrafish

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Capillary-Assisted Implantation Needles (CAIN) were created by pulling borosilicate thin wall with filament capillaries (GC100TF-10, Harvard Instruments) using a micropipette puller (Sutter Instruments, P-2000) with the following settings: Heat = 350, FIL = 4, VEL = 50, DEL = 225, PUL = 150. The tips of pulled needles were opened with jeweler’s forceps and then double-beveled using a MicroForge-Grinding Center (MFG-5, Harvard Instruments). Micromanipulation was achieved using a 3-axis micromanipulator (Narishige, M-152) with pressure control using a FemtoJet Express microinjection unit (Eppendorf). The VAMP (Vacuum-Assisted MicroProbe) was previously described (Takaki et al., 2013 (link)).
Larval zebrafish were anesthetized and implanted at 30 hpf in 0.252 g/L tricaine (Sigma, A5040) in a modified Schistosomula Wash medium (500 ml DMEM, 5 ml 1M HEPES and 2% antibiotic-antimycotic) to prevent egg hatching during implantation. Anesthetized larvae were grasped using the VAMP and an incision was made in the forebrain region using the CAIN. After making an incision, a single schistosome egg was picked up using the capillary action of the CAIN, and passed through the incision and deposited into the hindbrain ventricle (Video S1).
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6

RNA Lifetime Measurement by α-Amanitin Injection

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For RNA lifetime measurement, α-Amanitin injection was performed following the method of 26 . Briefly, embryos were collected at about 2 hours after deposition, dechorinated in 50% bleach, and staged by eye under the stereoscope. α-Amanitin was dissolved in nuclease-free water (Ambion AM9937) at a concentration of 1 mg/ml, and injected to stage 4-5 embryos (~50 pl per embryo) using an Eppendorf FemtoJet Express microinjector. Embryos were then incubated at room temperature for a delay time period (0, 2, 4, 6, 8, 30 minutes) before being fixed. hb mRNA in the embryo was labeled and imaged as described below.
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7

Generation of UAS-CSP5 Drosophila Strain

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Drosophila strains used and produced in the current study were maintained on the standard Bloomington food at 24 °C and 65% RH under a 12/12-h light/dark cycle. The sequence of AgosCSP5 (KC161567.1) was codon optimised for D. melanogaster expression (GeneArtTM–ThermoFisher Scientific) and cloned into the pUASTattB plasmid (GenBank: EF362409.1). The pUASTattB–AgosCSP5 construct was microinjected into the preblastodermal embryos of an integration strain [y w M(eGFP, vas-int, dmRFP)ZH-2A; P{CaryP}attP40] under an inverted microscope (eclipse TieU Nikon, Japan) equipped with a 10 × /0.25 lens, 10 × /22 eyepiece and fluorescence illumination. The empty pUASTattB plasmid was also injected and used as control. The injection mix was comprised of 0.5 × phosphate buffer (pH 6.8, 0.05 mM sodium phosphate, 2.5 mM potassium chloride), 300 ng/µL of the construct and 200 mg(a.i.)/L fluorescein sodium salt and was delivered by a FemtoJet express micro injector (Eppendorf, Hamburg, Germany). Injection needles were prepared according to Miller et al. (2002) [30 (link)].
The survivors were backcrossed, and the F1 progenies were screened for the white marker gene (orange eye phenotype). Positive flies were intercrossed to generate homozygous flies (red eye phenotype) of the final strain (UASCSP5 strain) and the control strain (UAS–empty strain).
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8

In vivo Electroporation for Retinal Labeling

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In vivo electroporation was used to deliver plasmids into the subretinal space, as previously described (Matsuda and Cepko, 2007 (link); updated electroporation protocol, described in detail in Wang et al., 2014 (link)). Camk2a-Cre pups were injected with a Cre-dependent reporter plasmid (at 1 µg/µl concentration, 0.3–0.5 µl of solution/injection area with two distinct electroporation patches per eye) expressing mCherry (pAAV-flexTC66T; Miyamichi et al., 2013 (link)) on postnatal day (p)0. Injections were performed using a pulled angled glass pipette controlled by a Femtojet Express pressure injector (Eppendorf, E5242956003) into the right eye. A short electric pulse was given to the animals right after the injections, to electroporate the construct. After weaning, mice were killed, and the retinas were processed for cryosections, as described above.
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9

Microinjection of Zebrafish Embryos with Bacteria

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The fertilized zebrafish embryos were lined against a glass slide in a petri dish and microinjection was performed using a glass needle (Harvard apparatus, Quebec, Canada) controlled with a micromanipulator Narishige MN-153 (Narishige International Limited, London, United Kingdom) connected to an Eppendorf FemtoJet express (Eppendorf AG, Hamburg, Germany). Microinjection (1–2 nL) of the bacterial suspension (approximately 150–300 CFU of bacteria in E3 medium) was performed into the yolk sac in 4–5 h post fertilized embryos. In parallel, a control group was injected with E3 medium only. To determine the number of bacteria in the injected volume, one drop was spread on agar plates before injection. To determine the bacterial counts in the embryos, 1–3 embryos were digested and plated just immediately after injection. Injected embryos were transferred into a petri dish with E3 medium and incubated at 30°C for 72 h and observed for any sign of disease and survival twice a day under a stereomicroscope. Both experimental settings were repeated four times.
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10

RNA Lifetime Measurement by α-Amanitin Injection

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For RNA lifetime measurement, α-Amanitin injection was performed following the method of 26 . Briefly, embryos were collected at about 2 hours after deposition, dechorinated in 50% bleach, and staged by eye under the stereoscope. α-Amanitin was dissolved in nuclease-free water (Ambion AM9937) at a concentration of 1 mg/ml, and injected to stage 4-5 embryos (~50 pl per embryo) using an Eppendorf FemtoJet Express microinjector. Embryos were then incubated at room temperature for a delay time period (0, 2, 4, 6, 8, 30 minutes) before being fixed. hb mRNA in the embryo was labeled and imaged as described below.
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