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3 protocols using nimodipine

1

Neuroprotective agents against radiation

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A clinical anti-vasoconstriction drug nimodipine and three autophagy inhibitors (Wortamanin, Ly294002 and Chloroquine) (Selleck). These small molecular inhibitors were added directly into fish water. nimodipine (5 μM) was immediately added into fish water after the radiation exposure, and the drug was changed daily for continuing 4 days. Living brain imaging by confocal was done at 2 and 4dpr. For the autophagy inhibitor treat groups, zebrafish embryos were soaked in fish water containing autophagy inhibitors (Wortamanin (1 μM), Ly294002 (10 μM) and Chloroquine (100 μM)) for 6 hours each day, and then washed and changed with fresh water until the death of these radiated larvae.
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2

Tat Protein Synthesis and Characterization

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Full length HIV Tat (B.FR.83.HXB2; K03455.1 (85 (link))) was prepared on 0.5 mmol 4(hydroxymethyl)phenoxymethyl-copolystyrene-1% divinylbenzene-resin (Applied Biosystems) using an Applied Biosystems 433A Peptide Synthesizer with FastMoc Chemistry as previously described (86 (link)). Peptides were deprotected and cleaved from the support using trifluoroacetic acid supplemented with 10% (vol/vol) (methylsulfanyl)benzene, 5% (vol/vol) H2O, and 5% (vol/vol) ethane-1,2-dithiol. Crude product was precipitated in 2-methoxy-2-methylpropane at −20°C, washed several times, filtered, and dried under vacuum. Tat was purified by reverse-phase HPLC as previously described (87 (link)). HPLC analysis was performed as previously described (86 (link)), amino acid analysis was performed on a Beckman Model 6300 Amino Acid Analyzer, mass spectrometry was carried out using an Ettan MALDI-TOF mass spectrometer (Amersham Biosciences), and concentration determined with a NanoDrop 1000 spectrophotometer (Thermo Fisher) using a molar attenuation coefficient of 8480 M−1·cm−1 at 280 nm (88 ). Monoclonal anti-Tat antibody was purchased from Abcam (Cat# ab43014, RRID:AB_732970). LPS and EGTA were purchased from Sigma, trypsin was purchased from Gibco, and celecoxib, nimodipine, SC560, and tacrolimus were purchased from Selleck Chemicals.
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3

SARS-CoV-2 Propagation and Drug Screening

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Vero E6 cell line was obtained from American Type Culture Collection and maintained in minimum Eagle’s medium (Gibco Invitrogen) supplemented with 10% fetal bovine serum (FBS; Gibco Invitrogen) and 1% antibiotic/antimycotic (Gibco Invitrogen), at 37 °C in a humidified 5% CO2 incubator. Huh7 cell line was cultured in Dulbecco’s modified Eagle’s medium (DMEM; Gibco Invitrogen) supplemented with 10% FBS and 1% antibiotic/antimycotic (Gibco Invitrogen), at 37 °C in a humidified 5% CO2 incubator.
SARS-CoV-2 (nCoV-2019BetaCoV/Wuhan/WIV04/2019) was propagated in Vero E6 cells2 (link), and viral titer was determined by 50% tissue culture infective dose (TCID50) as described in our previous study5 (link). All the infection experiments were performed in a biosafety level-3 (BSL-3) laboratory.
Benidipine HCI (Selleck Chemicals, no. S2017), amlodipine besylate (Selleck Chemicals, S1813), cilnidipine (Selleck Chemicals, S1293), nicardipine HCl (Selleck Chemicals, S4181), nifedipine (Selleck Chemicals, S1808), isradipine (Selleck Chemicals, S1662), nimodipine (Selleck Chemicals, S1747), nisoldipine (Selleck Chemicals, S1748), felodipine (Selleck Chemicals, S1885), 2APB (Selleck Chemicals, S6657), BAPTA-AM (Selleck Chemicals, S7534), and CQ (Sigma-Aldrich, no.C6628) were purchased from indicated companies.
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