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13 protocols using p 1010

1

Optical Rotation and Spectroscopic Analysis

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Optical rotation was measured in CHCl3 solution by a P-1010 digital polarimeter (Jasco, Tokyo, Japan). 1H and 13C NMR spectra were recorded at 400 and 100 MHz in CDCl3 by Bruker spectrometers (Karlsruhe, Germany). ESIMS were recorded using LC/MS ESIMS-TOF system (Agilent 6230B, HPLC 1260 Infinity) (Milan, Italy). The HPLC separation was performed using a Phenomenex LUNA (C18 (2) 5u 150 mm × 4.6 mm) (Torrance, CA, USA). Analytical, preparative, and reverse-phase TLCs were carried out on silica gel (Merck, Kieselgel 60, F254, 0.25, 0.5 mm, and RP-18 F254s respectively) plates (Merck, Darmstadt, Germany). The spots were visualized by exposure to UV radiation, or by spraying first with 10% H2SO4 in MeOH, and then with 5% phosphomolybdic acid in EtOH, followed by heating at 110 °C for 10 min. Column chromatography was performed using silica gel (Kieselgel 60, 0.063–0.200 mm) (Merck, Darmstadt, Germany).
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2

Structural Elucidation of Novel Compound by NMR

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Structural elucidation of the new compound by NMR spectra (1H NMR, 13C NMR, gHSQC (heteronuclear single quantum correlation) and heteronuclear multiple bond correlation (gHMBC)) were performed using a Varian Unity INOVA AS 400 FT-NMR spectrometer (Varian, Palo Alto, CA, USA), and chemical shifts were expressed in δ (ppm), with tetramethylsilane (TMS) used as an internal standard. The dimethyl sulfoxide-d6 (DMSO-d6) was used as a solvent. Melting points were obtained using a Fisher-John’s melting point apparatus. Optical rotations were measured on a JASCO P-1010 digital polarimeter. Infrared spectra were obtained on a Perkin Elmer Spectrum One FTIR spectrometer (Perkin-Elmer, Walthanm, MA, USA). High resolution fast-atom bombardment mass spectrometry (HR-FAB/MS) were recorded using a JEOL JMS-700 (JEOL, Tokyo, Japan) mass spectrometer.
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3

Spectroscopic Characterization of Organic Compounds

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Optical rotations were measured in a CH3Cl solution on a Jasco (Tokyo, Japan) P-1010 digital polarimeter. The UV and ECD spectra were recorded at room temperature on a Jasco (Tokyo, Japan) J815 spectropolarimeter, using 0.1 mm cells and concentrations of about 1 × 103 M in CH3CN solution. During measurement, the instrument was thoroughly purged with N2. 1H NMR spectra were recorded at 400 MHz in CDCl3 on either Bruker (Karlsruhe, Germany) or Varian (Palo Alto, CA, USA) Inova spectrometers. Analytical and preparative thin-layer chromatography (TLC) was performed on silica gel (Kieselgel 60, F254, Merck, Darmstadt, Germany) 0.25 mm and 0.5 mm plates, respectively. The compounds spots were visualized on TLC plates by exposure to UV light and/or by spraying them, first with 10% H2SO4 in MeOH, and then with 5% phosphomolybdic acid in EtOH, followed by heating at 110 °C for 10 min. Column chromatography (CC) was carried out on silica gel (Kieselgel 60, 0.063–0.200 mm, Merck, Darmstadt, Germany). The dimethyl acetal 2 was obtained as previously described [25 (link),32 (link)]. CHCl3 was distilled from P2O5 prior its use and stored under nitrogen atmosphere. All solvent and reagents were purchased from Merck (Darmstadt, Germany) and used without further purification unless otherwise stated.
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4

Comprehensive Analytical Characterization

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The optical rotation was measured on a JASCO P-1010 (JASCO, Easton, MD, USA). UV data were recorded on a CARY 50 Probe UV-visible spectrophotometer (Agilent Technologies, Santa Clara, CA, USA). The IR spectra were recorded using a PerkinElmer FTS FT-IR spectrophotometer (PerkinElmer, Shelton, CT, USA). Electronic circular dichroism (ECD) spectra were recorded on a JASCO J-815 CD spectropolarimeter (JASCO, Easton, MD, USA). The NMR spectra were recorded on a Bruker AV400 (400 MHz for 1H-NMR, 100 MHz for 13C-NMR; Bruker, Billerica, MA, USA) using tetramethylsilane (TMS) as an internal standard. Silica gel G60 (60–200 mm; SiliCycle Inc., Quebec, QC, Canada), and Sephadex LH-20 (18–111 µm, GE Healthcare, Chicago, IL, USA) were used for column chromatography (CC). HRESIMS spectra were obtained with a Bruker micrOTOF-Q II (Bruker, Billerica, MA, USA). TLC normal and TLC reverse phase analysis were performed on Silicycle’s aluminum sheet coated with silica gel F-254 (SiliCycle Inc., Quebec, QC, Canada) and on Merck’s aluminum sheets coated with silica gel 60 RP-18 F245s (Merck, Rahway, NJ, USA), respectively.
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5

Spectroscopic Analysis of Organic Compounds

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Optical rotations were measured on a JASCO P-1010 digital polarimeter. All NMR spectra were measured on a Varian VNMRS 500 spectrometer (500 and 125 MHz for 1H and 13C, respectively) using CD3OD as solvent, with proton and carbon chemical shifts recorded at δH 3.30 and δC 49.0. The ESI mass spectra were acquired using an ABSCIEX QTRAP 3200 instrument. High-performance liquid chromatography (HPLC) was performed using a Varian Prostar system with a 355 refractive index (RI) detector or Agilent 1200 Chemstation with diode array detector. The separation was performed using the Phenomenex or YMC C18 column (10 mm × 250 mm, 5 μm) with solvents that were distilled before use.
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6

Analytical Characterization of Organic Compounds

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All the reagents were purchased from Sigma-Merck (Milan, Italy), unless specified otherwise. Optical rotations were measured on a Jasco P-1010 digital polarimeter (Tokyo, Japan); 1H and 13C nuclear magnetic resonance (NMR) spectra were recorded at 400 and 100 MHz, respectively, in CDCl3, acetone-d6 and CD3OD on a Bruker spectrometer (Billerica, MA, USA). The same solvents were used as internal standards. DEPT, COSY-45, HSQC, HMBC and NOESY experiments [50 ] were performed using Bruker microprograms. Electrospray ionization mass spectra (ESIMS) were performed using the LC/MS TOF system AGILENT 6230B (Agilent Technologies, Milan, Italy). Analytical and preparative thin layer chromatography (TLC) were performed on silica gel plates (Kieselgel 60, F254, 0.25 and 0.5 mm respectively) or on reverse phase (Kieselgel 60 RP-18 F254, 0.20 mm) plates and the compounds were visualized by exposure to UV light and/or iodine vapors and/or by spraying firstly with 10% H2SO4 in MeOH and then with 5% phosphomolybdic acid in EtOH, followed by heating at 110 °C for 10 min. Column chromatography (CC) was performed using silica gel (Merck, Kieselgel 60, 0.063–0.200 mm).
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7

Analytical Characterization of Compounds

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A Bruker 400 Anova Advance (Karlsruhe, Germany) spectrometer was used to record the proton nuclear magnetic resonance (1H NMR) at 400 MHz. CDCl3 was used as a solvent and internal standard. A digital polarimeter, the JASCO P-1010 (Tokyo, Japan), was used to measure the optical rotations. Liquid Chromatography/Mass Spectrometry-Time of Flight (LC/MS TOF) system AGILENT 6230B (Agilent Technologies, Milan, Italy) and High-performance liquid chromatography (HPLC) 1260 Infinity were used to perform Electrospray ionisation mass spectra (ESIMS). Column chromatography (CC) was performed using silica gel (Kieselgel 60, 0.063–0.200 mm, Merck, Darmstadt, Germany). Analytical and preparative silica gel plates (Kieselgel 60, F254, 0.25 and 0.5 mm, respectively, Merck, Darmstadt, Germany) and thin-layer chromatography (TLC) were performed. Spots Visualization was carried out by exposure to UV light (254 nm) and/or iodine vapors and/or by spraying first with 10% H2SO4 in MeOH and then with 5% phosphomolybdic acid in EtOH, followed by heating at 110 °C for 10 min. Sigma-Aldrich Co. (St. Louis, MO, USA) supplied all the reagents and the solvents.
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8

Spectroscopic Analyses of Metabolites

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The optical rotations of pure metabolites were measured in CHCl3 or MeOH on a Jasco P-1010 digital polarimeter (Tokyo, Japan). FT–IR spectra were recorded in modality ATR (attenuated total reflectance) with model Nicolet 5700 by Thermo Electric Corporation (Waltham, MA, USA). The measuring cell consisted of a mono crystal of zinc selenide. The blank was recorded using air as reference. UV spectra were recorded in CH3CN by Cary model 5000 Spectrophotometer by Varian C. (Palo Alto, CA, USA). 1H and 13C NMR spectra were recorded on a Bruker AMX instrument at 400 and 100 MHz, respectively, in CDCl3. The same solvents were used as internal standards. COSY-45, HSQC, HMBC, and NOESY were performed using standard Bruker microprograms. TLC was performed on silica gel (Kieselgel 60, F254, 0.25 mm, Merck, Darmstadt, Germany) or reverse-phase plates (Whatman, KC18 F254, 0.20 mm). The spots were visualized by exposure to UV radiation (253 nm) or by spraying first with 10% H2SO4 in methanol followed by heating at 110 °C for 10 min. Chromatography was performed on silica gel column (Merck, Kieselgel 60, 0.063–0.200 mm). HRESI-TOF mass spectra were measured on an Agilent Technologies ESI-TOF 6230DA instrument in the positive ion mode (Milan, Italy).
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9

Isolation and Characterization of Mellein Derivatives

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The optical rotations were recorded on a JASCO P-1010 (Tokyo, Japan) digital polarimeter. A spectrometer 400 MHz Bruker was employed to record 1H NMR spectra in CDCl3 or CD3OD, which were used also as internal standards. TOF LC/MS spectrometer Agilent 6230B was used to record ESI mass spectra. Analytical and preparative Thin-Layer Chromatography (TLC) was performed on SiO2 plates (Kieselgel 60, F254, 0.25 and 0.5 mm respectively) or on reverse phase (Whatman, KC18 F254, 0.20 mm) plates (Merck, Darmstadt, Germany). The spots were visualized by exposure to UV light (254 nm) and/or iodine vapors and/or by spraying first with 10% H2SO4 in MeOH, and then with 5% phosphomolybdic acid in EtOH, followed by heating at 110 °C for 10 min. Column chromatography was carried out using silica gel (Merck, Kieselgel 60, 0.063–0.200 mm). The samples of (3R)-mellein (6); (3R,4R)- (3R,4S)-4-hydroxy melleins (7 and 8); and (3R)-6-hydroxymellein (9) were obtained as previously reported from S. urbana [45 (link)] and P. chenopodiicola [46 (link)], respectively. (3R)-6-methoxymellein (10) was prepared starting form compound 9 by reaction with an ether solution of diazomethane and MeOH.
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10

Comprehensive Analytical Characterization

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The HR-ESI–MS spectra were measured using an Exactive Plus mass spectrometer (Thermo Fisher Scientific, Bremen, Germany). The 1H-NMR and 13C-NMR spectra were measured using a Bruker Avance III 500 spectrometer (Bruker Daltonics, Bremen, Germany) with TMS as an internal standard. Optical rotations were measured using a JASCO P-1010 spectropolarimeter (Jasco Co., Tokyo, Japan).
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