The largest database of trusted experimental protocols

3 protocols using muramic acid

1

Quantitative analysis of amino sugars

Check if the same lab product or an alternative is used in the 5 most similar protocols
10 mM solutions of D-glucosamine hydrochloride (Alfa Aesar, Karlsruhe, Germany) and D-galactosamine hydrochloride (Sigma-Aldrich, St. Louise, USA) were prepared in ultrapure water (MilliQ, Millipore, Bedford, MA). Muramic acid (Sigma-Aldrich, St. Louise, USA) standard solution was prepared by dissolving 5 mg in 10 mL ultrapure water resulting in an approximate analyte concentration of 2 mM. In addition, a 10 mM solution of D-mannosamine hydrochloride (Sigma-Aldrich, St. Louise, USA) was prepared. The standard solutions were stored at −20°C until diluted into working standards. Formic acid for mass spectrometry (Sigma-Aldrich, St. Louis, MO), ammonia (Merck, Darmstadt, Germany), and ACN (for HPLC) from VWR were used in eluents.
The instrumental setup included the following: a Shimadzu LC-10AD isocratic pump (Kyoto, Japan), a mobile phase degassing unit (Uniflows, Tokyo, Japan), an Agilent 1100 autoinjector with appurtenant thermostat (Santa Clara, CA) where the samples were held at 4°C prior injection, a ZIC-HILIC analytical column (150 × 2.1 mm, 5 μm) from SeQuant (Umeå, Sweden), and an API3000 mass spectrometer (AB Sciex, Concord, Canada).
+ Open protocol
+ Expand
2

Carbohydrate Compound Sourcing and Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
D-Mannosamine hydrochloride was obtained from Sigma (M4670) or Spectrum Chemical MFG Corp (M3220). 1-Amino-1-deoxy-D-Fructose hydrochloride (D-isoglucosamine) (803278), D-(+)-Galactosamine (1287722), D-(+)-Glucosamine (1294207), N-acetyl-Mannosamine (A8176), N-acetyl-galactosamine (A2795), N-Acetyl-Glucosamine (A8625), Meglumine (M9179), Muramic acid (M2503), N-Acetylneuraminic acid (A2388), D-(+)-Glucose (D9434), D-(+)-Mannose (1375182), Meglumine (M9179), Tunicamycin from Streptomyces sp. (T7765) and SP600125 (S5567) were obtained from Sigma. Hypure cell culture grade water used to dissolve compounds (endotoxin < 0.005 EU/ml) was obtained from Hyclone. Axitinib was obtained from Santa Cruz (SC-217679). Tauroursodeoxycholic acid (TUDCA) was from Calbiochem (1180-95-6) and 4-phenylbutyric acid (4-PBA) (P21005), Castanospermine (Cas, C3784), Kifunensine (K1140), and DMSO (D2650) were from Sigma. DMSO (D2650) was used as a solvent for Cas.
+ Open protocol
+ Expand
3

Seawater Carbohydrate Analysis Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Prior to the analysis of carbohydrates in seawater, all used laboratory glassware had been washed with ultrapure water (conductivity >18.2 MΩ•cm) thoroughly and pre-heated in a muffle furnace at 550°C for 4 h. All plastic equipment was washed in 10% HCl solution and washed with ultrapure water three times.
For calibrating the HPAEC-PAD and determining the recovery of individual monosaccharides, a mixed stock solution was prepared from fucose (Roth, 95%), galactosamine (Sigma, 99%), rhamnose (Sigma, 99%), arabinose (Sigma, 99%), glucosamine (Fluka), galactose (Fluka, 99%), glucose (99%), xylose (Fluka, 99%), mannose (Fluka,99%), fructose (Aldrich, 99%), ribose (Aldrich, 98%), muramic acid (Sigma, 95%), galacturonic acid (Sigma-Aldrich, 97%), glucuronic acid (Sigma, 97%), mannuronic acid (Sigma, 90%). https://doi.org/10.5194/os-2020-2 Preprint. Discussion started: 17 January 2020 c Author(s) 2020. CC BY 4.0 License. Synthetic seawater samples were made of commercially available sea salts (Sigma). The salinity in practical salinity units (PSU) and the pH of water aliquots was measured by using a conductivity meter (pH/Cond 3320, WTW).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!