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3 protocols using superscript 3 first strand synthesis supermix for quantitative

1

Quantification of Sulfate Transporter Genes in Rice

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Total RNA was extracted from rice roots using TRIzol Reagent (Life Technologies Corporation, Carlsbad, CA, United States) and then purified using PureLink ® RNA Mini Kit (Life Technologies Corporation, Carlsbad, CA, United States), according to the manufacturer’s instructions. Contaminant DNA was removed on-column using PureLink ® DNase (Life Technologies Corporation, Carlsbad, CA, United States). The first-strand cDNA synthesis was carried out using the SuperScript™ III First-Strand Synthesis SuperMix for quantitative real-time PCR (qRT-PCR; Life Technologies Corporation, Carlsbad, CA, United States), according to the manufacturer’s instructions.
The qRT-PCR analysis of OsSULTR1;1 (LOC_Os03g09970) and OsSULTR1;2 was performed on the first-strand cDNA in a 20 μl reaction mixture containing GoTaq ® qPCR Master Mix (Promega) and the specific primers, using an ABI 7300 Real-Time PCR system (Applied Biosystems). The relative transcript level of each gene was calculated by the 2–ΔΔCt method using the expression of the OsS16 (LOC_Os11g03400) gene as reference. Primers for qRT-PCR are listed in Supplementary Table 1.
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2

Quantitative Real-Time PCR Analysis

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cDNA was generated by SuperScript III First-Strand synthesis Super Mix for quantitative real-time polymerase chain reaction (qRT-PCR)(Life Technologies, Carlsbad, CA, USA). The assessment of mRNA levels was performed using a 7900HT Fast Real-Time PCR system (Life Technologies, Carlsbad, CA, USA) using Power SYBR Green PCR Master Mix (Life Technologies) or TaqMan Gene Expression Master Mix (Life Technologies). All real-time PCRs were performed in four replications, and the fold change in expression of mRNAs was calculated using the ΔΔCt method, with rRNA18Sas an internal control.
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3

Hippocampal mRNA Expression Analysis

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The hippocampal area from three mice from each experimental group was rapidly dissected. The tissue was placed in liquid nitrogen and stored at -80°C until mRNA extraction was performed with an RNeasy Mini kit (QIAGEN, cat. no. 74104) . Reverse transcription was performed using the SuperScript III First-Strand Synthesis SuperMix for quantitative real-time polynerase chain reaction (PCR) (Life Technologies) on an Applied Biosystems 7500 Real-Time PCR System with TaqMan probes (Applied Biosystems). The sets of probes and primers used in this analysis were as follows: Mm00599890_m1 (IFN-γ receptor 1: IFNγR1), Mm00438334_m1 (colony-stimulating factor 3: CSF3), Mm00439619_m1 (interleukin 17A:IL 17A), Mm00445235_m1 (chemokine (C-X-C motif) ligand 10: CXCL 10), Mm00441258_m1 (chemokine (C-C motif) ligand 3: CCL 3), Mm99999915_g1 (glyceraldehyde-3-phosphate dehydrogenase: GAPDH_mouse1). For each experimental group, two samples from three individuals, i.e., six samples, were subjected and relative levels of each of the mRNA expression were determined by RT-qPCR. The level of GAPDH mRNA serves as a loading control. Measurement was based on the comparative C T (ΔΔC T ) method for relative quantitation of gene expression.
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