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Native running buffer

Manufactured by Thermo Fisher Scientific

Native running buffer is a buffer solution designed for the electrophoretic separation of native proteins and protein complexes under non-denaturing conditions. The buffer is formulated to maintain the native structure and biological activity of proteins during the separation process. It is commonly used in Native Polyacrylamide Gel Electrophoresis (Native PAGE) applications.

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2 protocols using native running buffer

1

Native Lipoprotein Profiling in Plasma

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Plasma samples were mixed with an equal volume of native sample buffer and 5 μl were separated by 4 to 16% polyacrylamide gradient gel electrophoresis in native running buffer (Invitrogen, Carlsbad, CA). Electrophoresis was carried out at 60 V constant voltage at 10°C for 18 h. Separated lipoproteins were electrotransferred to polyvinylidene difluoride membranes. Plasma samples were prestained with a lipophilic dialkylaminostyryl fluorophore (N-(3-Sulfopropyl)-4-(4-(didecylamino)styryl)pyridinium, inner salt [Di10-ASP-PS] (Molecular Probes)). Fluorescent-stained lipoproteins were detected with a Typhoon scanner (GE Healthcare) and analyzed with ImageQuant software (GE Healthcare).
ApoA-I and ApoE-containing lipoproteins were detected by Western blot analysis with polyclonal antibodies against mouse ApoA-I (PAB 10089, Abnova) and ApoE (ab947, Chemicon). Molecular weights (particle sizes) were determined using High Molecular Weight Native Marker Kit (GE Healthcare: thyroglobulin (669 kDa, 17 nm), ferritin (440 kDa, 12.2 nm), catalase (232 kDa, 9.2 nm), lactate dehydrogenase (140 kDa, 8.1 nm), and bovine serum albumin (67 kDa, 7.1 nm)).
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2

Native Gradient PAGE for LDL Analysis

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6 μl of plasma were stained with 2 μl (0.1 mg/ml in dimethyl sulfoxide) lipophilic dialkylaminostyryl fluorophore (Di10-ASP-PS, Molecular Probes) and diluted with 8 μl 2x native sample buffer (Invitrogen). 5 μl of the sample were separated by 4 to 16% polyacrylamide gradient gel electrophoresis in native running buffer (Invitrogen) at 60 V for 18 h at 10°C. In addition, five reference proteins (HMW-Native Marker Kit, GE-Healthcare) were run simultaneously for calibrating particle sizes: thyroglobulin (17 nm), apoferritin (12.2 nm), catalase (9.2 nm), lactatedehydrogenase (8.2 nm), and BSA (7.1 nm). LDL particles were determined by comparing migration distances to those of proteins of known size [15 (link)]. PAGE-gels were scanned on a Typhoon 9400 scanner (GE Healthcare) with an excitation of 488 nm and emission of 610 nm to detect the fluorescence dye bound to the serum lipoproteins.
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