The 96-block module is a laboratory equipment designed to hold 96 samples or reagents in a standardized microplate format. It provides a consistent and organized platform for various analytical and experimental procedures within a laboratory setting.
RNA was isolated using RNeasy Mini kit (Qiagen) and mRNA quantitation was performed using SYBR Green in an ABI PRISM 7500 sequence detection system with 96-block module and automation accessory (Applied Bio-system). GAPDH or ß-actin was used as an internal control. All samples were analyzed in triplicate. The primer sequences are listed in the Table 2.
The primer sequences used for gene expression analysis using qPCR
SETD1A
Forward
5′-GGCCAGATTCATCAACCACT-3′
SETD1A
Reverse
5′-CGATCTTCTTCTGGGACTCG-3′
SKP2
Forward
5′-ATGCCCCAATCTTGTCCATCT-3′
SKP2
Reverse
5′-CACCGACTGAGTGATAGGTGT-3′
GAPDH
Forward
5′-AGTCCTTCCACGATACCAAAGT-3′
GAPDH
Reverse
5′-CATGAGAAGTATGACAACAGCCT-3′
β-Actin
Forward
5′-CTCTTCCAGCCTTCCTTCCT-3′
β-Actin
Reverse
5′-AGCACTGTGTTGGCGTACAG-3′
BTG2
Forward
5′-CAGAGCACTACAAACACCACTG-3′
BTG2
Reverse
5′-CTGAGTCCGATCTGGCTGG-3′
Tajima K., Matsuda S., Yae T., Drapkin B.J., Morris R., Boukhali M., Niederhoffer K., Comaills V., Dubash T., Nieman L., Guo H., Magnus N.K., Dyson N., Shioda T., Haas W., Haber D.A, & Maheswaran S. (2019). SETD1A protects from senescence through regulation of the mitotic gene expression program. Nature Communications, 10, 2854.
RNA was isolated using RNeasy Mini kit (Qiagen) and mRNA quantitation was performed using SYBR Green in an ABI PRISM 7500 sequence detection system with 96-block module and automation accessory (Applied Bio-system). GAPDH was used as an internal control. All samples were analyzed in triplicate. The primer sequences are listed in the Table S3.
Antonishyn N.A., McDonald R.R., Chan E.L., Horsman G., Woodmansee C.E., Falk P.S, & Mayhall C.G. (2000). Evaluation of Fluorescence-Based Amplified Fragment Length Polymorphism Analysis for Molecular Typing in Hospital Epidemiology: Comparison with Pulsed-Field Gel Electrophoresis for Typing Strains of Vancomycin-Resistant Enterococcus faecium. Journal of Clinical Microbiology, 38(11), 4058-4065.
RNA was isolated using RNeasy Mini kit (Qiagen, Hilden, Germany) and used for real-time quantitative reverse transcription (qRT)-PCR using SYBR Green in an ABI PRISM 7500 sequence detection system with a 96-block module and automation accessory (Applied Biosystem, Karlsruhe, Germany). Glyceraldehyde 3-phosphate dehydrogenase was used as an internal control gene. All samples were analyzed in triplicate. The primer sequences are listed in Supplementary Table 1.
Li X., Gao D., Wang H., Li X., Yang J., Yan X., Liu Z, & Ma Z. (2015). Negative feedback loop between p66Shc and ZEB1 regulates fibrotic EMT response in lung cancer cells. Cell Death & Disease, 6(4), e1708-.
RNA was isolated using RNeasy Mini kit (Qiagen) and mRNA quantitation was performed using SYBR Green in an ABI PRISM 7500 sequence detection system with 96-block module and automation accessory (Applied Bio-system). GAPDH was used as an internal control. All samples were analyzed in triplicate. The primer sequences are listed in the Table S3.
Matsuda S., Revandkar A., Dubash T.D., Ravi A., Wittner B.S., Lin M., Morris R., Burr R., Guo H., Seeger K., Szabolcs A., Che D., Nieman L., Getz G.A., Ting D.T., Lawrence M.S., Gainor J., Haber D.A, & Maheswaran S. (2023). TGF-β in the microenvironment induces a physiologically occurring immune-suppressive senescent state. Cell reports, 42(3), 112129.
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