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366 protocols using bz x700 microscope

1

Quantitative Analysis of Cell Morphology

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The number of the abnormal cells with spindle shapes (Fig. 4d) and the open area generated by treatment with EVs (Fig. 4e) were observed with a BZ-X700 microscope (Keyence, Japan) and analysed using the image analysis application for the BZ-X700 microscope (Keyence). To assess the shapes of the cells, abnormal shape was defined to be over the cutoff value of the aspect ratio, which was set as 0.8, and analysis was performed using the application software in 49 randomly selected fields and expressed as a relative number (Fig. 4d). The open area (μm2) determined by the application software was analysed in six randomly selected fields and expressed as relative values (Fig. 4e).
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2

Imaging Techniques for 3D Brain-like Tissue

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Fluorescent images were obtained using a Keyence BZ-X700 microscope and associated software. Bright-field and fluorescent images were obtained using a Keyence BZ-X700 microscope and associated software. Fluorescent images of 3D samples were taken using a Leica TCS FLIM SP8 (Wetzlar, Germany) confocal microscope. Scanning electron microscopy (SEM) was performed using a Zeiss Evo MA10 (Carl Zeiss Microscopy, Germany) to visualize the morphological properties of 3D brain-like tissue samples. Constructs were thoroughly dried and cross-sectioned and then gold-sputter–coated to prepare for subsequent SEM analysis.
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3

Quantifying Oxidative Stress in Islets and Cells

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For mouse islets, following stress treatment, 50–100 intact islets were transferred to a polysterene round bottom tube and CellROX Deep Red Reagent (Invitrogen) was added at 1:500 dilution to culture media followed by incubation at 37 °C for 45 min. Islets were washed 2X with PBS, dispersed to single cell suspension, attached to slides using cytospin, and imaged using fluorescence microscopy (Keyence BZ-X700 microscope). GFP signal was used to identify transduced cells and the CellROX signal from each cell was quantified and normalized by cell area using BZ-X Advanced Analysis Software. Signal from at least 60 GFP positive cells was assessed for each condition per experiment.
For Min6 cells, following stress treatment, CellROX Deep Red Reagent (Invitrogen) was added at 1:500 dilution directly to culture media followed by incubation at 37 °C for 30 min. Cells were washed 2X with PBS and imaged using fluorescence microscopy (Keyence BZ-X700 microscope). Bright field images were used to determine cell areas and CellROX signal was quantified from at least 6 imaging fields for each group using BZ-X Advanced Analysis Software.
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Histological Examination of Tumor Tissues

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Fixed tumor tissues and major organs (lung, liver, kidney, heart, and spleen) were embedded in paraffin and sectioned with a thickness of 4 μm by the staff of the UTHSC Research Histology Core. Hematoxylin-eosin (H&E) staining was performed on all tumors and major organs for histological examination. Representative images were acquired using a Keyence BZ-X700 microscope. IHC and human mitochondrial staining were performed with primary antibodies that included rabbit anti-Ki67 (1:400, #9027, Cell Signaling Technology (CST)), rabbit anti-CD31 (1:100, #77699, CST), rabbit anti-cleaved caspase-3 (1:200, #9661, CST) and mouse anti-human-specific mitochondria (1:1000, #ab92824, Abcam) as described [16 (link)]. IHC slides were imaged using a Keyence BZ-X700 microscope and staining of Ki67, CD31, cleaved caspase-3, and human-mitochondria were quantified in 7 or 8 representative fields per group using the IHC Profiler module in ImageJ software [44 (link)].
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5

Visualizing Cellular Uptake of Pan-ICG

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The H226 or H520 cells (1 × 104) were plated on a covered glass-bottomed culture well and were incubated for 24 hr. Next, the Pan-ICG was added to the medium (5 μg/mL) and the cells were incubated for either 1 or 6 hr. The cells were then washed once with phosphate-buffered saline, and were subjected to fluorescence microscopy using a BZ-X700 microscope (Keyence, Osaka, Japan) equipped with filters meeting the following criteria: excitation wavelength 672.5–747.5 nm and emission wavelength 765–855 nm. Transmitted light differential interference contrast images were also acquired.
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6

Hematoxylin and Eosin Staining Protocol

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Hematoxylin and eosin (H&E) staining were performed on paraffin-embedded 4-micron sections. Briefly, sections were deparaffinized in xylenes and rehydrated in graded ethanols. Sections were stained with Mayer’s modified hematoxylin (S216–32OZ, Poly Scientific) and eosin phloxine alcohol working solution (S176–32OZ, Poly Scientific). After dehydration in graded ethanols and clearing with xylenes, slides were cover-slipped. Images were obtained under 200x magnification (BZ-X700 microscope, Keyence, Itasca, IL).
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Quantifying DNA Methylation by Immunofluorescence

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Cells were fixed in 4% formaldehyde for 30 min at room temperature. After washing twice with PBS, the cells were permeabilized for 5 min with 0.5 % Triton X-100 in PBS and treated with 2N HCl for 30 min at room temperature. Subsequently, the cells were blocked with PBS containing 1% BSA and stained with an anti-5-Methylcytosine mouse mAb (Merck Millipore, Burlington, MA, USA; 162 33 D3) diluted 1:500 in blocking solution, followed by a rabbit anti-mouse IgG (H+L) Alexa Fluor® 488 conjugate antibody (Thermo Fisher Scientific, dilution 1:500) for 60 min at room temperature. All images were acquired using a BZ-X700 microscope (KEYENCE).
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8

Biodistribution of mRNA LNPs in Tumor-Bearing Mice

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Five groups of ES-2-Luc bearing mice (n=5, day ten after ES-2-WT cells inoculation) were injected with single doses of Cy5-EGFP, EGFP, equimolar EGFP/FST, FST mRNA LNPs (10 μg total mRNA per dose) or PBS. Four hours after injection, mice were euthanized, organs and ascitic fluid collected for further analysis. Fluorescence images of ascites were visualized using Cy5 and GFP filters on the Keyence BZ-X700 microscope (Keyence Corp., Osaka, Japan). Absolute quantification of EGFP mRNA by qRT-PCR on cells from the ascitic fluid was performed as described in the Quantitative RT-PCR section.
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9

Long-term growth kinetics of NHNCs

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Passage 3 cells that had reached subconfluence were replated; after 2 weeks, the cells at passage 4 were passaged again. To examine long-term growth kinetics, the cells were counted using a hemocytometer every 14 days from passage 4 to passage 10.
Population doubling (PD), a method of calculating proliferative capability, was performed for each subculture using the following equation: PD = [log10(NH)-log10(N1)]/log10(2); where, N1 is the inoculum number, NH is the cell harvest number, and log is logarithm [21 (link)]. The calculated PD increase was added to the PD level of the previous passages to yield the cumulative PD level. First, NHNCs were maintained in the Om (Om group); then, to examine the effect of E-BMP-2 on proliferation, NHNCs were cultured in Om supplemented with 100 ng/mL E-BMP-2 (Om + BMP group). Histological images in both groups were visualized on day 7 at passages 4 and 10 using a BZ-X700 microscope (Keyence, Osaka, Japan).
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10

Colon Tissue Immunohistochemistry for CA Infection

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The colon from untreated and TCA-treated mice infected with CA were collected after 10–12 days of infection. Colon tissue was fixed in 10% neutral buffered formalin solution, sectioned at 5 µm, and stained with DAPI and ZO-1 Antibody (21773-1-AP, Thermofischer, Waltham, MA, USA). Stained tissues were imaged (40X) using a Keyence BZ-X700 microscope.
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