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7 protocols using α sma 14395 1 ap

1

Comprehensive Protein Analysis in Mouse Aortic Samples

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Mouse aortic samples and MOVAS cell extracts were quantitated by a BCA kit (Thermo Scientific, USA) and subjected to Western blot measurement. The primary antibodies incubation was carried out at 4 °C overnight, followed by secondary antibodies at room temperature for 1 h. The protein expression was detected by Odyssey infrared imaging system (LICOR, USA) and analyzed by Quantity One software. The protein expression was normalized to corresponding GAPDH or Tubulin expression. In our work, the primary antibodies of GSDMD (ab209845), Caspase-11 (ab180673) and α7nAChR (ab10096), were purchased from abcam (UK). The primary antibodies of NLRP3 (#15101), ASC (#67824), Bcl-2 (#2870) and IL-1β (#31202) were purchased from Cell Signaling Technology (USA). Cleaved Capsase 1 (sc-56036) and OPN (Osteopontin, sc-21742) antibodies were obtained from Santa Cruz (USA). α-SMA (14395-1-AP) and IL-18 (10663-1-AP) antibodies were purchased from proteintech (USA). Tubulin (AF0001), Bax (AF0054) and GAPDH (AG019) antibodies from Beyotime (China) were used.
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2

Extracellular Vesicle Characterization Methodology

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Dulbecco’s modified Eagle medium (DMEM; #08458-45) and RPMI-1640 were obtained from Nacalai Tesque (Kyoto, Japan). Fetal bovine serum (FBS; #172012) and hepatocyte growth factor (HGF; #H1404) were procured from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against c-Met (C-28; #161), E-cadherin (#8426), and cytokeratin-18 (#6259) were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against CD9 (EXOAB-CD9A-1), CD63 (EXOAB-CD63A-1), CD81 (EXOAB-CD81A-1), and α-SMA (#14395-1-AP) were obtained from Proteintech (Rosemont, IL, USA). Antibodies against β-actin (#4967), phospho-AKT (Ser473; #9271), extracellular signal-regulated kinase (ERK) 1/2 (3A7; #9107), phospho-ERK 1/2 (p-ERK 1/2; Thr202/Tyr204, E10; #9106), and AKT (#9272) were purchased from Cell Signaling Technology (Danvers, MA, USA). Lipofectamine 3000 (#L3000008), TRIzol (#15596-018), and anti-phospho-c-Met antibody (pypypy1230/1234/1235; #44888G) were obtained from Life Technologies (Carlsbad, CA, USA). The antibody against vimentin (#M0725) was procured from DAKO (Glostrup, Denmark). Streptavidin 10 nm gold (#AC-10-04-05) was purchased from Cosmo Bio (Tokyo, Japan).
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3

Histological and Immunohistochemical Analysis of Lung and Heart

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Lung and heart specimens were fixed in 4% formalin, embedded in paraffin and sectioned longitudinally at a thickness of 5 µm. Slides were stained with hematoxylin–eosin (HE) and Elastic van Gieson (EVG) using previous protocols [29 (link)]. The percentage of medial wall thickness was measured n distal pulmonary arteries (20–70 μm diameters, n = 30 per rat). Images were captured using a light microscope (CellSens Imaging Software, Olympus, Tokyo, Japan). For immunohistochemistry staining, paraffin-embedded lung sections were incubated with α-SMA (#14395-1-AP, Proteintech, Wuhan, China) overnight at 4 °C. Semi-quantitative analysis for staining of α-SMA was conducted to categorize the degree of pulmonary arterial muscularization. The co-staining of α-SMA and ATF4 was conducted to determine the expression of ATF4 in the PASMCs. Lung sections were incubated with α-SMA (1:50 dilution) and ATF4 (1:100 dilution) at 4 °C overnight. Then, sections were incubated with the fluorescent secondary antibody (1:250) and DAPI. Afterward, sections were observed and photographed by an inverted fluorescence microscope (Leika Microsystems, Wetzlar, Germany).
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4

Comprehensive Protein Expression Analysis

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The following primary antibodies were used for western blotting, immunofluorescence, and immunohistochemical analysis: p-c-Met (#3077; Cell Signaling Technology, Danvers, MA, USA), c-Met (ab51067; Abcam, Cambridge, UK), p-mTOR (#2971; Cell Signaling Technology), mTOR (#2983; Cell Signaling Technology), p-p44/42 MAPK (#9101; Cell Signaling Technology), p44/42 MAPK (#9102; Cell Signaling Technology), α-SMA (14,395-1-AP; Proteintech, Rosemont, IL, USA), MMP2 (10,373-2-AP; Proteintech), MMP9 (10,375-2-AP; Proteintech), TIMP2 (sc-21735; Santa Cruz Biotechnology, Dallas, Texas, USA), COL I (immunofluorescence: ab6308; Abcam; immunohistochemistry: LS-C343921; LSBio, Seattle, WA, USA), COL III (immunofluorescence: ab7778; Abcam; immunohistochemistry: LS-C413514; LSBio), β-actin (sc-47778; Santa Cruz Biotechnology), VEGF (sc-57496; Santa Cruz Biotechnology), and vimentin (ab92547; Abcam). The following secondary antibodies were used: anti-rabbit IgG HRP (western blotting: #7074; Cell Signaling Technology: immunofluorescence: R37117; Thermo Fisher, Waltham, MA, USA; immunohistochemistry: PK-4001; Vector Laboratories, Burlingame, CA, USA) and goat anti-mouse IgG HRP (western blotting: ADI-SAB-100; Enzo Life Science, Farmingdale, NY, USA; immunofluorescence: A11005; Thermo Fisher; immunohistochemistry: PK-4002; Vector Laboratories).
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5

Protein Expression Analysis in Mouse Lung

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Total protein was extracted from mouse left lung tissue, and its concentration was determined using the bicinchoninic acid assay. Then the constituent proteins were separated by electrophoresis in a 10% sodium dodecyl sulfate polyacrylamide gel, transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, United States), covered with 5% milk at room temperature for 1 h, and incubated overnight with appropriate primary antibodies diluted in 0.1% Tween 20 (TBST) at 4°C. Primary antibodies against the following proteins were used: SMAD2/3 (8685T, Cell Signaling Technology, Beverly, MA, United States), p-SMAD2/3 (8828S, Cell Signaling Technology), TGF-β1 (3711S, Cell Signaling Technology); GAPDH (AC002, Abclonal, Wuhan, China); αSMA (14395-1-AP, Proteintech), collagen I (14695-1-AP, Proteintech), and PAI-1 (TA504056S, Origene, Maryland). After washing with TBST, the membranes were incubated with anti-rabbit or anti-mouse IgG horseradish peroxidase conjugated antibody (Cell Signaling Technology) for 1 h at room temperature. The protein bands were visualized using SuperSignale West Pico plus Chemiluminescent Substrate (Thermo Fisher Scientifice, Waltham, MA, United States).
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6

Protein Extraction and Western Blot Analysis from Liver Samples

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Total proteins from liver homogenates were extracted using RIPA buffer. Nucleus and cytoplasm proteins were prepared using the extraction buffer as previously described[18 (link)]. Identical amounts of proteins were subjected to SDS-PAGE, and then transferred to PVDF membranes. The membranes were blocked with 5% milk, and then incubated with following primary antibodies: FAS (H-300, #sc-20140), ACCα (H-76, #sc-30212), SREBP1 (H-160, #sc-8984), COL4A2 (T-15, #sc-70246), TGFβ1 (V, #sc-146), MCP1 (FL-148, #sc-28879) and Nrf2 (C-20, #sc-722) from Santan Cruz Biotechnology, USA; IL-1β (#16806-1-AP), TNFα (#60291-1-Ig) and αSMA (#14395-1-AP) from Proteintech, USA; Histone H3 (T22, #BS1405) from Bioworld Technology, USA; β-actin (1E9A3, #TA-09) from ZSGB-BIO, China. Thereafter, the membranes were incubated with corresponding secondary peroxidase-coupled antibody. Finally, the detection procedure was performed using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Temecula, CA, USA). Densitometric analysis was performed using the Image J software. β-actin served as a loading control for total or cytosolic proteins, and Histone H3 served as the loading control for nuclear proteins.
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7

Western Blot Analysis of Tight Junction Proteins

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Western blot was performed as previously described. Briefly, HBMECs were lysed with RIPA lysis buffer (P0013C, Beyotime) and protein concentration was tested by BCA protein assay kit (P0012S, Beyotime). Polyacrylamide gel electrophoresis was used to separate proteins of different sizes and proteins were transferred to polyvinylidene fluoride membranes (IPVH00010, Millipore). Membrane was incubated with primary antibody overnight, and subsequently incubated with second antibody labelled with horse radish peroxidase. Target proteins were visualized using a Tanon chemiluminescence system. Band intensity was quantified using ImageJ software. Protein relative levels were shown as fold change relative to control group. Primary antibodies were listed as followed: Occuludin (33-1500, Invitrogen), ZO-1(40-2300, Thermo Fisher Scientific), α-SMA (14395-1-AP, Proteintech), BAI2 (ab189112, Abcam) and β-actin (60008-1-Ig, Proteintech).
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