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Sc 2056

Manufactured by Santa Cruz Biotechnology

Sc-2056 is a lab equipment product offered by Santa Cruz Biotechnology. It is designed for specific functions in the laboratory setting, but a detailed description cannot be provided while maintaining an unbiased and factual approach. Additional information about the intended use or capabilities of this product is not available.

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6 protocols using sc 2056

1

Western Blot Analysis of Protein Targets

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Cells were lysed in RIPA buffer (150 mM NaCl, 50 mM Tris, 0.5% Na-Deoxycholate, 0.1% SDS, and 1% NP-40), and an equal amount of protein was resolved using Nupage Novex 4–12% Bis-Tris Gel (Thermo Fisher Scientific) as previously described in ref. 22 (link). Primary antibodies used were β-ACTIN (ACTB) (1:5,000, #2228; Sigma), ATRX (1:1,000, sc-15408; Santa Cruz Biotechnology), Flag (1:1,000, F1804; Sigma), H3 (1:2,000, ab1791; Abcam), H3K36me2 (1:1,000, 2901; Cell Signaling), H3K36me3 (1:2,000, 61101; Active Motif), KDM2A (1:1,000, A301-476A; Bethyl Laboratories), SENP6 (1:500, HPA024376; Sigma-Aldrich), SMC5 (1:2000, A300-236A; Bethyl Laboratories), and TUBULIN (1:2,000, ab15246; Abcam). Secondary antibodies used were donkey anti-rabbit HRP (1:1,000, sc-2077; Santa Cruz Biotechnology), donkey anti-mouse HRP (1:1,000; sc-2096, Santa Cruz Biotechnology), and donkey anti-goat HRP (1:1,000, sc-2056, Santa Cruz Biotechnology). Antibody signal was detected using the ECL Western Blotting Substrate (W1015, Promega) and X-ray film (F-BX810, Phenix).
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2

Immunohistochemical Localization of FOXO1

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Uterine tissue was dehydrated through a graded ethanol series, cleared in toluene, and then embedded in paraffin. We cut 7-μm cross sections on a microtome and mounted on Shandon polysine precleaned microscope slides (6776215Cs, Thermo Fisher). Sections were stored in the dark at room temperature until they were stained. We localized the expression of FOXO1 using immunohistochemistry. Slides were deparafinized in three successive washes of xylene (3 min each), then three successive washes of ethanol (3 min). Antigen retrieval was performed in citrate buffer (12 mM sodium citrate, pH 6.0, 98°C, 1 h). Endogenous peroxidase activity was blocked with Dako Peroxidase Block (Dako, 30 min). Slides were then incubated in primary antibody overnight. We used a goat polyclonal antibody generated against the N-terminal of human FOXO1 protein (1:5,000 dilution, FKHR antibody sc-9809, SantaCruz). On day two, slides were incubated in a donkey anti-goat IgG-HRP secondary (1 h, 1:200 dilution, sc-2056 SantaCruz). Slides were then rinsed in PBS (5 min), PBS-BSA (0.1%, 5 min), then incubated for 5 minutes in TSA Plus Cyanine 3 system (1:50 NEL744001KT, PerkinElmer Inc.). Slides were again washed in PBS (5 min) and PBS-BSA (0.1%, 5 min), counter stained in DAPI (1 time, 2 min, 10236276001; Roche), washed in deionized water for 5 min, and mounted in glycerol (50%).
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3

Western Blot Analysis of Angiogenesis Markers

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The 70–80% confluent cell lysates were collected using M-PER® buffer supplemented with protease and phosphatase inhibitor cocktail (Roche Applied- Science). Protein concentrations were measured by Bradford assay (Thermo Scientific). Lysates containing 10–30 μg of protein were electrophoresed using 10% SDS-bispolyacrylamide gels, and separated proteins in the gels were transferred to nitrocellulose membranes. After 1 hour blocking in 5% milk/TBST, the membranes were incubated overnight at 4 °C with primary antibodies diluted in 4% BSA (Sigma Aldrich)/TBST solution. After washing, the membranes were incubated with secondary antibodies for 1 h at room temperature and immunoreactive bands were visualized by chemiluminescent substrate (Thermo Scientific). Secondary antibodies, anti-mouse HRP (1:1000, #32430, Thermo Scientific), anti-rabbit HRP (1:10,000, #31460, Thermo Scientific) and anti-goat HRP(1:5000, sc-2056, Santa Cruz)were diluted in 5% milk/TBST solution. The following primary antibodies were used for western blotting: ANTXR1 (1:1000, ab21269, Abcam), Flk1 (1:1000, sc-504, Santa Cruz), p-Flk1 (1:1000, sc-101820, Santa Cruz), Flt1 (1:1000, sc-316, Santa Cruz), VEGF-A (1:500, sc-152, Santa Crus), and β-actin (1:5000, A5441, Sigma Aldrich) and HA (1:500, sc-805, Santa Cruz).
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4

Western Blot Protein Analysis Protocol

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For cellular lysis, cells were washed twice in phosphate buffered saline and lysed in protein lysis buffer. Lysates were incubated on ice for 30 min and subsequently centrifuged at 4°C and 13000 rpm for 15 min. Protein concentration of the supernatant has been determined using a Bradford protein assay (Bio-Rad). After addition of sample buffer, dithiothreitol, and H2O, the protein has been denatured at 95°C for 5 min. Protein mix was run on commercial precast 4–12% Bis-Tris gels (NuPAGE® SDS-PAGE Gel System, LifeTechnologies, Carlsbad, CA, United States) and transferred onto a nitrocellulose membrane by a commercial wet/tank blotting system (Trans-Blot®, Bio-Rad Laboratories, Hercules, CA, United States). After blocking with 5% milk, the blots were incubated with the primary antibody (anti-SGLT2, ab37296, Abcam or anti-GAPDH, sc-32233, Santa Cruz Biotechnology, Dallas, TX, United States) overnight at 4°C. The proteins were then detected by enhanced chemiluminescence (Pierce ECL Plus, Thermo Scientific) after labeling with a horseradish peroxidase-labeled secondary antibody according to the manufacturer’s instructions (sc-2056, sc-2314, or sc-2004, Santa Cruz). Densitometric analysis was performed with ImageJ 1.49v.
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5

Cardiac Protein Analysis by Western Blot

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A standard protocol was followed to assess protein levels via western blot in mouse heart. Hearts that had been crushed in liquid nitrogen were homogenized in RIPA buffer (Thermo Fisher cat no 89900) supplemented with protease/phosphatase inhibitors (Thermo Fisher cat no 78440). SDS PAGE was performed using Bio-Rad Criterion TGX gels. Protein was then transferred from the gel onto a nitrocellulose membrane and then the membrane was blocked for 1 hr in 5% non-fat dry milk (NFDM) in TBST at room temperature, incubated at 4°C overnight in the appropriate primary antibody diluted in 5% Bovine Serum Albumin (BSA) in TBST, and washed 4x 5 min in TBST. Membranes were then incubated for 1 hr in the appropriate secondary antibody in 1% NFDM in TBST at room temperature and then washed 4x 5 min in TBST. Primary antibodies included Plin2 (Abcam, ab52356), Plin5 (Novus Biologics, NB110-60509), PPARα (Abcam, ab24509), and 4-HNE (Chemicon, AB5605). Secondary antibodies included anti-rabbit (Jackson, AB_2337913) and anti-goat (Santa Cruz, sc-2056). Membranes were then developed with ECL prime (Cytiva Amersham, RPN2232) and results analyzed using Image J. For H-NE and carbonylation antibodies, the entire lane was analyzed.
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6

Antibody Characterization for Western Blotting and Immunofluorescence

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The following antibodies were used for Western blotting (WB) and/or immunofluorescence (IF). Anti-53BP1 (sc-22760, Santa Cruz, WB 1:500, IF 1:300), anti-γ-H2AX (JBW301, Millipore, WB 1:5000, IF 1:300), anti-γ-H2AX (ab11174, Abcam, IF 1:300), anti-Flag (clone M2, Sigma, WB 1:5000, IF 1:500), anti-β-tubulin (CST2146S, Cell Signaling, WB 1:5000), anti-GAPDH (sc-32233, Santa Cruz, WB 1:1000), anti-GFP (sc-9996, Santa Cruz, WB 1:1000, IF 1:100), anti-HA (sc-805, Santa Cruz, WB 1:1000), anti-Myc (CST2272, Cell Signaling, WB 1:1000, IF 1:100), anti-USP21 (HPA028397, Sigma, WB 1:500–1:1000), anti-BRCA2 (OP95, Calbiochem, WB 1:1000), anti-BRCA1 (sc-SC-6954, Santa Cruz, IF 1:100), anti-RAD51 (sc-8349, Santa Cruz, WB 1:1000, IF 1:50), anti-CtIP (sc-271339, Santa Cruz, IF 1:100), anti-RPA (NA19L, Millipore, 1:200), FK2 (BML-PW8810-0100, Enzo, IF 1:1000), anti-PALB2 (gift from B. Xia, WB 1:1000), anti-LaminA/C (sc-6215, Santa Cruz, WB 1:1000). The following secondary antibodies were used for WB: goat anti-rabbit HRP IgG (sc-2030, Santa Cruz, 1:5000), goat anti-mouse HRP IgG (sc-2031, Santa Cruz, 1:5000), donkey anti-goat HRP IgG (sc-2056, Santa Cruz, 1:1000). Secondary antibodies for IF were used at 1:250 dilution: Alex Fluor 488 anti-mouse IgG (H + L), Alexa Fluor 488 anti-Rabbit IgG (H + L), Alex Fluor 568 anti-mouse IgG (H + L), Alex Fluor 568 anti-Rabbit IgG (H + L).
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