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75 protocols using avidin biotin complex kit

1

Quantifying c-Kit+ Cells in Colon

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After the mice of each group were sacrificed, the proximal colon was collected immediately, fixed with 10% formalin, embedded in paraffin, sectioned to a thickness of 5 mm, deparaffinized and submitted to hematoxylin and eosin (H&E, Sigma-Aldrich, Shanghai, China) staining. Immunohistochemistry was performed using a previously described method (Huang et al., 2019 (link)). Briefly, 3 μm sections were deparaffinized in xylene and rehydrated in graded alcohol. After quenching endogenous peroxidase activity and blocking non-specific binding, the sections were incubated with a rabbit monoclonal antibody [EPR22566-344] against c-Kit (Abcam, ab256345) overnight at 4°C and then incubated with the secondary antibody goat anti-rabbit IgG (H + L) HRP (ab0101, Abways) at room temperature for 30 min. Finally, the slides were incubated with reagents from the Avidin-Biotin Complex Kit (Vector Laboratories, Inc., Burlingame, USA) and a 3,3′-diaminobenzidine kit (Tiangen, China) according to the manufacturer’s instructions. Images were captured with a Nikon Ci-S microscope and Nikon DS-U3 imaging system. The proportion of c-Kit-positive cells in the colonic muscle layer was determined using an image analyzer (Image-Pro Plus 6.0, Media Cybernetics, Inc., Rockville, USA).
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2

Immunohistochemical Analysis of Skin Biomarkers

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For immunohistochemical staining, antibodies against filaggrin, KLK7, PAR-2, TSLP, and IL-4 were used. First, the skin sections were subjected to proteolysis in proteinase K (20 μg/μL; Agilent Dako, Santa Clara, CA, USA) for 5 min and then treated with 10% normal goat serum (Vector Lab, Burlingame, CA, USA) containing 1% fetal bovine serum (Sigma-Aldrich) for 1 h. Then, the appropriate primary antibody was reacted in a humidified chamber at 4 °C for 72 h. The secondary antibody, biotinylated goat anti-mouse IgG (1:100, Abcam), was linked for 24 h at room temperature and reacted with an avidin-biotin complex kit (Vector Lab) for 1 h at room temperature. After color development in 0.05 M Tris-HCl buffer (pH 7.4) containing 0.05% 3,3′-diaminobenzidine and 0.01% HCl, counterstaining was performed with hematoxylin.
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3

Immunofluorescence Staining of Paraffin-Embedded Tissue

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Paraffin-embedded tissue sections were deparaffinized and rehydrated. Heat-induced epitope retrieval was performed using a target retrieval solution (Dako) for 5 min in a microwave. Slides were treated with 3 % hydrogen peroxide for 10 min to inactivate endogenous peroxidase, and then the slides were blocked for 20 min at room temperature in a blocking solution (5 % normal horse serum, 1 % normal goat serum, 0.1 % Triton-X 100 in 1× PBS). After blocking, the slides were incubated in primary antibodies at 4 °C overnight; including mouse monoclonal antibody against human Ki-67 (BD Pharmingen), mouse monoclonal antibody against human cytoplasm (STEM-121, Stem Cells), mouse monoclonal antibody against human nestin (Thermo), mouse monoclonal antibody against human SOX2 (Cell Signaling technology), mouse monoclonal antibody against human GFAP (Sigma), mouse monoclonal antibody against NK1.1 (Novus biological), and rabbit monoclonal antibody against human HLA-A (MHC class I, abcam). Slides were washed and incubated with secondary antibodies for 1 h at room temperature [Avidin-Biotin complex kit (Vector lab) or Alexa Flour 488 or 594 conjugated antibodies (Invitrogen)]. Slides were counterstained with hematoxylin (Sigma-Aldrich) or DAPI (Sigma-Aldrich).
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4

Immunohistochemical Assessment of Vascular Density

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Immunohistochemical staining was performed on 5-μm paraffin sections. After the sections were deparaffinized, heat-induced epitope retrieval was performed by immersing the slides in 0.01 M sodium citrate buffer (pH 6.0). To block endogenous peroxidase activity and the nonspecific binding of antibodies, the sections were preincubated for 1 h at room temperature in 0.1 M phosphate-buffered saline containing 10% normal goat serum and 0.3% H2O2. The sections were incubated with one of two primary antibodies: rabbit polyclonal anti-von Willebrand factor (vWF) antibody (1:100; Abcam, Cambridge, MA, USA) or rabbit polyclonal anti-vascular endothelial factor (VEGF) antibody (1:50; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA). The sections were treated with biotinylated goat antirabbit immunoglobulin G (IgG; 1:200, Jackson ImmunoResearch Laboratories, Inc., West Grove, PA, USA). An avidin–biotin complex kit (Vector Laboratories, Inc., Burlingame, CA, USA) and a diaminobenzidine substrate kit (Vector Laboratories, Inc.) were used to visualize the brown reaction product, following the manufacturer’s recommendations. Vascular density was determined through immunohistochemical staining for vWF. Microvessel density was determined by counting the number of vessels positive for vWF staining in at least four random lung fields at 400× magnification in an unbiased manner [20 (link)].
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5

Immunohistochemistry and Immunocytochemistry Protocol

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Mice were anesthetized and perfused intracardially with phosphate-buffered saline (PBS, pH 7.2) for 30 s, followed by 4% paraformaldehyde in 0.1 M phosphate buffer (PB) at pH 7.2. Brains were removed, cryoprotected in 30% sucrose at 4°C, and sectioned at 40 μm using a freezing microtome. Free-floating sections were in 4% paraformaldehyde in 0.1 M phosphate buffer for 10 min and preblocked in 4% normal goat serum in PBS, 0.1% Triton X, and then incubated with mEM48 antibody at 4°C for 48 h. The immunoreactive product was visualized with the Avidin–Biotin Complex kit (Vector ABC Elite, Burlingame, CA, USA).
Cultured cells were fixed with 4% paraformaldehyde for 15 min, and then blocked for 1 h with 3% BSA and 0.2% triton X-100 in 1X PBS. Cells were incubated overnight with primary antibodies in 3% BSA in 1X PBS. The nucleus was visualized using Hoechst staining (Molecular Probes) at a dilution of 1:5000. Fluorescent images were obtained using a Zeiss microscope (Axiovert 200 MOT) with a digital camera (Hamamatsu Orca-100) and OpenLAB software (Improvision Inc).
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6

Immunohistochemical Quantification of vWF

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Immunohistochemical staining was performed on 5-μm paraffin sections. After the paraffin sections were deparaffinized, heat-induced epitope retrieval was performed by immersing the sections in 0.01 M sodium citrate buffer (pH 6.0). To block endogenous peroxidase activity and the nonspecific binding of antibodies, the sections were preincubated for 1 h at room temperature in 0.1 M phosphate-buffered saline containing 10% normal goat serum and 0.3% H2O2. The sections were incubated with rabbit polyclonal anti-vWF antibodies (1:200, GTX60934; GeneTex, Irvine, CA, USA) for 20 h at 4 °C and biotinylated goat anti-rabbit IgG (1:200, Jackson ImmunoResesarch Laboratories, West Grove, PA, USA) for 1 h at 37 °C. The avidin–biotin complex kit (Vector Laboratories, Newark, CA, USA) and diaminobenzidine substrate kit (Vector Laboratories) were used to visualize the brown reaction product according to the manufacturer’s recommendations. All immunostained sections were viewed and photographed using an Olympus BX43 microscope. Digital images of each section were captured and quantified by counting the positive stained vessels in five randomly selected fields per section at × 400 magnification.
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7

Cell Surface Glycan Epitope Detection

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To determine the presence of glycan epitopes on primary monocytes and THP-1 cells, cell surface proteins on apical cell membranes were biotinylated using the Cell Surface Protein Isolation kit (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s instructions. The biotinylation efficiency was confirmed by Western blotting using the Avidin-Biotin Complex Kit (Vector Laboratories, Newark, CA, USA).
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8

Immunohistochemical Analysis of CD177 and F4/80

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Immunohistochemistry was performed using a previously described method (17 (link)). Briefly, 3 μm sections were deparaffinized in xylene and rehydrated in graded alcohol. After quenching endogenous peroxidase activity and blocking non-specific binding, the sections were incubated with a mouse monoclonal antibody against CD177 or F4/80 (Santa Cruz, CA, USA) overnight at 4°C and then incubated with a biotinylated secondary antibody (Zymed Laboratories, Carlsbad, CA, USA) at room temperature for 20 min. Finally, the slides were incubated with reagents from the Avidin-Biotin Complex Kit (Vector Laboratories, Burlingame, CA, USA) and a 3,3'-diaminobenzidine kit (Tiangen, Sichuan, China) according to the manufacturer's instructions. Images were captured with an Olympus CX43 microscope and CellSens Entry software.
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9

Immunohistochemical Analysis of Lung Adenocarcinoma

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Lung lobes were inflated with PBS/4% paraformaldehyde and fixed for 24 hours, stored in 70% ethanol, and paraffin-embedded and sectioned. 4 μm thick sections were used for Hematoxylin and Eosin (H&E) staining and immunohistochemistry.
Primary antibodies used for IHC were anti-STAG2 (1:500, LifeSpan Cat# LS-B11284, RRID:AB_2725802), anti-NKX2.1 (1: 250, Abcam Cat# ab76013, RRID:AB_1310784), anti-Phospho-RPA2 (1:400, Abcam Cat# ab87277, RRID:AB_1952482), anti-Phospho-Histone H2A.X (1:400, Cell Signaling Technology Cat# 9718, RRID:AB_2118009) and anti-Phospho-ERK1/2 (1:400, Cell Signaling Technology Cat# 4370, RRID:AB_2315112). IHC was performed using Avidin/Biotin Blocking Kit (Vector Laboratories, SP-2001), Avidin-Biotin Complex kit (Vector Laboratories, PK-4001) and DAB Peroxidase Substrate Kit (Vector Laboratories, SK-4100) following the standard protocols. Human lung adenocarcinoma tissue microarrays were purchased from US Biomax (HLugA120PG01, BC041115e, LC1261, LC706a, NSC155 and NSC157).
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10

Immunohistochemical Detection of Amyloid-β

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The fixed brains were embedded in paraffin, and subsequently cut in sections of 5 µm. After deparaffinization with xylene and rehydration through graded ethanol series, the slides were cooked for 20 min in citrate buffer for antigen retrieval. Slides were then stained overnight at 4°C with anti-amyloid-β antibody (1:1000; Abcam ab2539) followed by a 1 hr room temperature incubation with biotinylated secondary antibody (1:300; Dako E0431). Immunodetection was visualized using an Avidin-Biotin Complex kit (Vector Laboratories, UK), and sections were counterstained with haematoxylin before mounting. The slides were digitized with an automatic bright field microscope (Philips Ultra Fast Scanner, Philips, the Netherlands) and assessed by one examiner (LPM) for positivity for amyloid-β.
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