The largest database of trusted experimental protocols

Agilent sb c18 column

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Agilent SB-C18 column is a high-performance liquid chromatography (HPLC) column designed for the separation and analysis of a wide range of organic compounds. The column features a silica-based stationary phase with C18 bonded ligands, which provide a stable and reproducible reversed-phase chromatographic environment. The SB-C18 column is suitable for a variety of applications, including the analysis of pharmaceuticals, environmental samples, and other complex mixtures.

Automatically generated - may contain errors

21 protocols using agilent sb c18 column

1

Melatonin Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Melatonin and melatonin-derivatives extraction was done through a modification of the methods described by Riga et al [28 (link)] and Li et al. [33 (link)]. Briefly, 1 g of frozen leaves were ground into powder with liquid nitrogen and homogenized in a mix of acetone:methanol:water (89:10:1) containing 2.5 mM trichloroacetic acid. The homogenates were shaken for 30 min at RT and centrifuged at 10,000× g at 4 °C for 15 min. The supernatants were centrifuged again and subsequently filtered with Whatman filter paper (0.4 µm). The filtered supernatants were purified using an SPE cartridge (Waters, Milford, MA, USA). The cartridge was then washed with 10 mL 5% methanol, and melatonin was finally eluted at a natural flow rate with 2 mL 80% methanol. The extracts were subsequently filtered through a Whatman filter paper (0.20 μm) before UHPLC-ESI-MS/MS analysis. Melatonin, 3OH-Mel, AFMK and AMK determination and quantification was analyzed using a UHPLC-ESI-MS/MS (UHPLC-1290 Series and a 6460 QqQ-MS/MS; Agilent Technologies, Waldbronn, Germany) with an Agilent SB-C18 column (4.6 × 50 mm; 1.8 μm; Agilent Technologies, Santa Clara, CA, USA). The data reported are the mean ± SE of 3 biological replicates per treatment.
+ Open protocol
+ Expand
2

Quantifying Signature Peptides of Transporters

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Agilent 1290 series UPLC system and Agilent 6460 series MS/MS system (Agilent Technologies, Santa Clara, CA, United States) were hereby combined to quantify the signature peptides in the ESI-positive ionization mode. The conditions of mass spectrometry were as follows: a capillary voltage of 2,000 V; a gas flow of 8 L/min; a nebulizer of 30 psi; a gas temperature at 300°C; and a Delta EMV(+) of 400 V. Five milliliters of the sample was injected into the column (Agilent SB-C18 column, 2.1 mm × 50 mm, 1.8 µm particles) and eluted at 0.4 mL/min with a gradient elution of water (with 0.05% v/v formic acid) (A) and acetonitrile (B) (0–1 min, 5–5% B; 1–4 min, 5–60% B; 4–5 min, 60–5% B; and re-equilibration for 3 min). According to previous experiments by the research group of Yi et al. (2018) (link), the sequences of characteristic peptides corresponding to UGT1A1 and the nine other transporters are listed in Table 1.
+ Open protocol
+ Expand
3

Analytical Techniques for Compound Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
High performance liquid chromatography (HPLC) analyses were conducted on an Agilent 1290 system with an Agilent-SBC18 column (4.6 × 250 mm, 5 μm). Thin Layer Chromatography (TLC) was carried out on silica gel GF254 plates from Qingdao marine chemical company, China. The medium pressure liquid chromatography was performed on Combi Flash Rf 200 (Teledyne Isco, Lincoln NE, USA) with a SEPAF FLASH® Flash silica gel column (330 g, Santai Technologies, China). Nuclear Magnetic Resonance (NMR) data was acquired using Bruker AVIII-600 spectrometer (150 MHz for 13C NMR and 600 MHz for 1H NMR, Bruker Corporation, Karlsruhe, Germany). High resolution electrospray ionization mass spectra (HRESIMS) were recorded on a Thermo LTQ Orbitrap XL Mass Spectrometer (Thermo Fisher Scientific, USA).
+ Open protocol
+ Expand
4

Quantitative Analysis of C3S in Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
The qualitative and quantitative analysis of C3S in samples was carried out by LCMS-8050 liquid chromatography-mass spectrometry [25 (link)]. An Agilent SB-C18 column (4.6 × 150 mm, 2.7 μm; Agilent Technologies Inc., Palo Alto, CA, USA) was used to separate the anthocyanin samples. The flow rate and injection volume were 1 mL/min and 20 μL, respectively. The column temperature was 35 °C. The chromatographic column passed through phase A (5% formic acid in water) and phase B (5% formic acid in acetonitrile). The elution gradient was as follows: 5% B (0–5 min); 5–10% B (5–10 min); 10–27.5% B (10–40 min).
The acquisition mode of MS was automatic ESI-MS/MS in positive ion mode, under the following conditions: atomizing gas flow rate, 3 L/min; heating gas flow rate, 10 L/min; interface temperature, 350 °C; DL temperature, 250 °C; heating module temperature, 400 °C; dry air flow rate, 10 L/min; fragmentation voltage, 4 KV; scan mode, Q3 Scan; scan range, 100–1000 m/z.
+ Open protocol
+ Expand
5

Plasma Extraction and HPLC Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The blood samples were centrifuged at 3000 G for 10 min to separate plasma and red blood cells. 2 mL acetonitrile was added to the sample of plasma (1 mL). The plasma solution was vortexed, followed by centrifugation at 3000 G for 10 min. After the supernatant had been separated from the pellet, each portion was counted with a gamma counter (PerkinElmer Wizard 2480) to determine the extraction efficiency. Each supernatant was diluted with water and passed through a 0.45 um nylon filter for HPLC injection. With Agilent 1200 series, 200 uL solution was injected onto Agilent SB-C18 column (250 × 10 mm) for analysis. The mobile phase was 34% acetonitrile in water (volume) and the flow rate was 1 mL/min. The HPLC eluent was collected 1 tube/min and 16 tubes were collected for each injection. The collected HPLC fractions were measured by Gamma Counter for further data analysis. Meanwhile the cold reference was also injected and monitored at 254 nm UV wavelength.
+ Open protocol
+ Expand
6

LCMS-based compound identification protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
10 μL sample was injected onto an Agilent SB-C18 column (2.1 mm × 50.0 mm, Agilent) and eluted at a flow rate of 400 μL/min. Mobile phase A was H2O containing 0.1% formic acid. Mobile phase B was acetonitrile containing 0.1% formic acid. Elution started with 10% mobile phase B for 3 min, which then raised to 100% over 21 min, stayed at 100% for 2 min, reduced to 10% over 0.1 min, and stayed at 10% for 3.9 min. The column temperature and UV detection wavelength were 30°C and 210 nm, respectively. Mass spectrometric analysis was performed on a Waters XEVO-G2 QTOF of a quadrupole and orthogonal acceleration time-of-flight tandem mass spectrometer. The scan range was m/z 50–600. For positive-ion mode, the capillary and cone voltage were set at 3.5 kV and 40 V, respectively. The desolvation gas was set to 600 L/h at a temperature of 450°C. The ion source temperature was set to 110°C.All data were acquired and processed using Waters MassLynxv4.1 software.
+ Open protocol
+ Expand
7

LC-MS/MS Metabolite Profiling Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chromatographic separation was conducted on an Agilent SB-C18 column (1.8 μm; 2.1 mm × 100 mm; Agilent Technologies, Santa Clara, CA, United States) at 40°C. The mobile phase consisted of solvent A [0.1% (v/v) formic acid in pure water] and solvent B (acetonitrile). The linear gradient program for elution was as follows: (a) from 0.00 to 9.00 min, phase B was in the range of 5–95% and maintained at 95% for 1 min; (b) from 10.00–11.10 min, the proportion of phase B was reduced to 5% and held for 14 min. The flow rate was 0.35 mL/min, and the injection volume was 4 μL. The effluent was alternately connected to an electrospray ionization-triple quadrupole-linear ion trap. The main conditions of the mass spectrometry were as follows: electrospray ionization temperature, 550°C; MS voltage, 5,500 V; curtain gas pressure, 30 psi; and collision-activated dissociation parameter, high. In triple quadruple pole (QQQ) mode, each ion pair was scanned according to the optimized declustering potential and collision energy (Chen et al., 2013 (link)).
+ Open protocol
+ Expand
8

Melatonin Extraction from Cabbage Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Melatonin was extracted from cabbge seeds and seedlings according to the method described in our previous work (Zhang H. J. et al., 2014 (link)). Approximately 1 g frozen samples were ground into powder with liquid nitrogen and homogenized with 10 mL methanol. After centrifugation at 11,417 g at 4°C for 15 min, the supernatants were collected and dried using nitrogen gas. The extracts were then dissolved in 5% methanol and purified using a C18 solid phase extraction (SPE) cartridge (Waters, Milford, MA, USA). The cartridge was next washed with 10 mL 5% methanol, and melatonin was eluted finally at a natural flow rate with 2 mL 80% methanol. The extract was subsequently filtered through a 0.22 μm PTFE syringe filter before UHPLC-ESI-MS/ MS analysis. Melatonin determination and quantification was analyzed using a UHPLC-ESI-MS/MS (UHPLC-1290 Series and a 6460 QqQ-MS/MS; Agilent Technologies, Waldbronn, Germany) with an Agilent SB-C18 column (4.6 9 50 mm; 1.8 l m; Agilent Technologies, Santa Clara, CA, USA).
+ Open protocol
+ Expand
9

UPLC-MS/MS Analysis of Analytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To evaluate the sample extracts, a UPLC‒ESI‒MS/MS system was used (UPLC, SHIMADZU Nexera X2; MS, Applied Biosystems 4500 Q TRAP). The analytical conditions were as follows: UPLC, Agilent SB-C18 column (1.8 µm, 2.1 mm*100 mm); mobile phase, solvent A (pure water with 0.1% formic acid) and solvent B (acetonitrile with 0.1% formic acid); gradient elution, 95%-5% A at 0-9 min, 5% A at 9-10 min, 5%-95% A at 10 min-11.1 min, and 95% A at 11.1 min-14 min; flow rate, 0.35 mL per minute; temperature, 40 °C; and injection volume, 4 μL. The effluent was alternatively connected to an ESI-triple quadrupole-linear ion trap (QTRAP)-MS [51 (link)].
+ Open protocol
+ Expand
10

Amino Acid Analysis in Corn Powder

Check if the same lab product or an alternative is used in the 5 most similar protocols
Corn powder (0.1 g) was dissolved in hydrochloric acid (6 mol/L, 8 mL) and bubbled with nitrogen gas, followed by hydrolysis at 120 °C for 2 h. Sodium hydroxide (10 mol/L, 4.8 mL) was then added to the previously mentioned solution [31 ]. The solution was filtered and diluted to 25 mL. The content of amino acids in the supernatant was determined using an Agilent-1200 HPLC system (Agilent Technologies, Waldbronn, Germany) equipped with a quaternary pump, online degasser, auto-sampler, and column heater–cooler. Separation was performed on an Agilent SB-C18 column (250 × 4.6 mm, particle size 5 mm; Agilent Technologies, Newport, DE, USA). Chromatographic analyses were carried out using gradient elution with mobile phase A, consisting of 0.05 mol/L sodium acetate buffer solution (pH = 6.50), and mobile phase B, consisting of an acetonitrile-water solution (v/v = 1:1). Gradient elution was initiated with 30% B, which was held for 5 min. Thereafter, it was increased linearly up to 100% B in 35.0 min. This composition was held for another 2.0 min before being reduced to 16% B in 7.0 min, followed by a re-equilibration time of 6.0 min, yielding a total run time of 55.0 min. The flow rate was set at 1.0 mL/min, and column temperature was maintained at 23 °C. The detection wavelength was 360 nm. Aliquots of 10 μL of the sample extract were injected into the chromatographic system.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!