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89 protocols using dfc320

1

Tube Formation Assay for ABCB5+ MSCs

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ABCB5+ MSCs were seeded in stem cell medium in a well of a 24-well plate coated with Geltrex basement membrane matrix (Thermo Fisher Scientific) and incubated for 19–22 h at 37°C and 3.1% CO2. Tube structures were photographed using an inverted microscope (DM IL light-emitting diode; Leica, Wetzlar, Germany) equipped with a digital camera (DFC320; Leica) at ×40 magnification and the photographs qualitatively analyzed per visual inspection for signs of capillary structure formation. Human umbilical vein endothelial cells (Thermo Fisher Scientific) and human skin melanoma cells (SK-MEL-28; American Type Culture Collection, Manassas, VA, USA) served as positive and negative controls, respectively.
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2

Coronal Brain Sections Immunostaining

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The coronal sections were stained with thionine and micrographs were taken on Leitz light microscope equipped with a Leica DFC320 camera. For each experimental group, several sections at different stereotaxic anterior-posterior (AP) coordinates were taken. Immunofluorescent staining procedures were performed as described previously (Dragić et al., 2021b (link)). Briefly, sections were washed in PBS, blocked in 5% normal donkey serum, incubated with primary antibodies (Table 1), overnight at 4°C. The next day, sections were washed in PBS, incubated with appropriate secondary antibody for 2 h at RT, and mounted with Mowiol medium. Micrographs were taken by a confocal laser scanning microscope (LSM 510, Carl Zeiss, GmbH, Jena, Germany), with Ar multi-line (457, 478, 488, and 514 nm), HeNe (543 nm), HeNe (643 nm) laser at 40× and 63× (×2 digital zoom) DIC oil objectives, 40× and monochrome AxioCam ICm 1 camera (Carl Zeiss, GmbH, Jena, Germany).
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3

Visualizing Blood Vessels in PFA-Fixed Tissue

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Blood vessels in PFA-fixed specimens were imaged with light microscopy using a rat monoclonal CD-31 antibody (Cat. No. 558736, BD Pharmingen, Franklin Lakes, NJ, USA) at 1:800 dilution in conjunction with a Tyramide Signal Amplification Biotin system (TSA Biotin Kit, Perkin Elmer Life Science, Waltham, MA, USA, Cat. No. NEL700001KT), following the detailed staining protocol provided by the manufacturer. Antigen retrieval was performed by boiling the samples for 15 min in 10 mM sodium citrate buffer (pH 6.0). Biotinylated secondary anti-rat antibody (Vector Laboratories, Oxfordshire, UK) was used at 1:250 dilution, streptavidin-conjugated horseradish peroxidase at 1:100 dilution and TSA reagent at 1:50 dilution. Stained sections were counterstained with Cole’s haematoxylin and mounted in Immumount (Thermo Scientific, Waltham, MA, USA). A Leica DM LB2 microscope with a digital camera (Leica DFC 320) was used for imaging.
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4

Immunofluorescence Staining of Dopaminergic Neurons

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After being anesthetized, the brains were removed from the skull, and fixed in 4% paraformaldehyde overnight, and then stored at 4°C in 30% sucrose solution until they sank. The brains were freeze sectioned using a sliding microtome (Leica, Germany) into 30-μm coronal sections. For immunofluorescence staining, the slices were permeabilized in 0.3% triton for 10 min, and then blocked with 10% serum in PBS for 1 h and incubated with a primary antibody (TH, Santa Cruz, sc-374047, 1:200; Sel1l, Sangon Biotech, D161115, 1:200; Sdhc, Proteintech Group, 14575-1-AP, 1:100) overnight at 4°C. The next day, the secondary antibodies (Dylight 594-Conjugated AffiniPure Goat Anti-Mouse, Jackson ImmunoResearch, 1:400; Dylight 488-Conjugated AffiniPure Goat Anti-Rabbit IgG, Jackson ImmunoResearch, 1:400) were added to the sections. Nuclei were stained by DAPI. The slices were imaged using microscopy (Leica DFC320, Germany). The number of TH-immunoreactive positive neurons in the SNpc was counted using the previously described counting criteria[12 (link)].
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5

Membrane Wettability Assessment by Contact Angle

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The
wettability of membrane samples was assessed by measuring the
contact angle, using the sessile drop method. All types of membranes
were tested, by analyzing 6 samples for each condition. The contact
angle was measured on images acquired with an optical microscope (Leica
MZ16) equipped with a 45° tilted mirror and a digital camera
(Leica DFC 320), then connected to the software Image Pro 3D Suite.
Membrane behavior was examined in the presence of three types of fluids,
namely deionized water (DW), deionized water + 10% FBS, and DMEM.
For each type of fluid, 4 μL were deposited on the sample and
the images were obtained after 30 s to allow drop stabilization. The
acquired images were analyzed using Fiji software and the contact
angle of each type of sample in the presence of all types of fluid
was calculated. Surface free energies were evaluated using the Owens–Wendt
method73 (link) adapted by Ren et al.74 (link) and Can-Herrera et al.71 (link) Both DW and ethylene glycol (EG) contact angles (4 μL of fluid/sample)
were considered to calculate the surface energy components: the polar/hydrophilic
component (γsp) and the dispersive/hydrophobic
component (γsd). The total surface free
energy (γs) was, therefore, calculated as
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6

Quantifying Myocardial Collagen Deposition

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Interstitial collagen was determined in the myocardium based on Sirius red staining. Photographs of the LV wall, excluding the septum, were taken using a 40x objective (Leica DFC320). Interstitial collagen was quantified in five randomly selected areas of the subendocardium and myocardium of the LV (40x objective) and results were expressed as percentage tissue positive for Sirius red relative to myocardial area. Morphometric parameters were analyzed using a computerized morphometry system (Leica Qwin V3, Leica, Rijswijk, The Netherlands).
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7

Regeneration Imaging and Analysis

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For in situ hybridization and in vivo protocols, images were obtained with a Leica Z6APO stereomicroscope equipped with a Leica DFC320 color camera. Immunostainings were imaged on a Zeiss LSM 710 confocal microscope. The ImageJ software was used to analyze the Z stacks and to measure regenerate area and blastema length. All statistical analyses were done on SPSS 16.0 software.
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8

Acridine Orange Staining for Cellular Acidic Vesicles

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Cells were seeded in coverslips dishes at a density of l × 104 cells/cm2, maintained 24 h for attachment and then treated or not with BSHE (whose GR50 concentrations were those referred to the 48 h-exposure). After 48 h-incubation, cells were washed twice with PBS, stained with 4 μg/mL AO for 10 min and washed again with PBS. The coverslips were overturned on microscope slides and immediately observed under fluorescence microscopy (Axio Imager A2 Zeiss). Images were acquired using a color camera (DFC320 Leica). AO is a metachromatic dye whose luminescence wavelength is strongly dependent on its concentration. In live cells, AO is accumulated by acidic vesicles yielding strong orange or red signals; it is also provided with affinity for nucleic acids yielding less intense green fluorescence (Pierzynska-Mach et al., 2014 (link)). The vesicle red fluorescence intensity was quantified by using Fiji-ImageJ image processing software (Schindelin et al., 2012 (link)). At least 50 cells per each experimental condition were analysed, while corrected total cell fluorescence (CTCF), of both BSHE-untreated and BSHE-treated cells, was obtained as follows: CTCF = Integrated Density - (Area of selected cell x Mean fluorescence of background readings). (https://theolb.readthedocs.io/en/latest/imaging/measuring-cell-fluorescence-using-imagej.html#measuring-cell-fluorescence-using-imagej).
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9

Immunofluorescence Staining of Adherent Cells and Spheroids

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Cells were seeded onto round glass coverslips of 15 mm diameter and allowed to grow up to 70% confluence. Cells were fixed with 3% paraformaldehyde (PFA) for 15 min and then incubated with a solution of 1% BSA, 0.1% Triton X-100 and 50 mM glycine in dPBS in order to perform blocking, permeabilization and quenching, for 30 min at RT. Primary antibodies diluted in dPBS + 2% BSA were added for 1 h, and secondary antibodies, for 30 min at RT. Nuclei were stained with DAPI. Glass slides were mounted with a Fluorescence Mounting Medium (Dako) and images were acquired with a Leica DM 3000 fluorescence microscope using a Leica DFC320 camera.
Spheroids in suspension were cytocentrifuged through Thermo Shandon Cytospin 3 (Thermo Scientific) at 500 RPM for 5 min. The slides were air-dried for 10 min and fixed with ice-cold acetone for 5 min. Then, the same procedure described for adherent cells was followed.
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10

ABCB5+ MSC Angiogenesis Assay

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ABCB5+ MSCs (1 × 105 and 1.5 × 105) were seeded in two wells of a 24-well plate coated with Geltrex® basement membrane matrix (Thermo Fisher) and incubated in stem cell medium for 19–22 h at 37 °C, 3.1% CO2. Tube structures were photographed using an inverted microscope (40× final magnification; DM IL LED, Leica, Wetzlar, Germany) equipped with a digital camera (DFC320, Leica) and semi-quantitatively classified into six (A–F) categories, ranging from A = tubular branches of several cells forming a defined network-like structure to F = no tubular branches visible (Fig. S2 (see Additional file 2)), with A–C being considered as successful angiogenic differentiation. For assay validation, human umbilical vein endothelial cells (Thermo Fisher) and human skin melanoma cells (SK-MEL-28, ATCC® HTB-72™, LGC Standards, Wesel, Germany) were used as positive and negative controls, respectively.
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