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119 protocols using sunrise absorbance reader

1

Colorimetric Iron Assay for Serum and Liver

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A commercially available colorimetric Iron Assay Kit (MAK025; Sigma-Aldrich, St. Louis, MO, USA) was used to determine serum and hepatic iron concentrations according to the manufacturer’s instructions. Serum was used directly while liver tissue weighing approximately 30–50 mg were freshly-homogenised in 10 volumes (w/v) of iron assay buffer. Tissue homogenate was centrifuged at 13,000× g for 10 min, and resultant supernatant was collected for the assay. Serum or liver samples were loaded and an acidic assay buffer was added to all wells in a ratio of 1:1 (v/v), to separate iron from bound proteins and an iron reducer added for total iron measurement. Absorbance was measured at 593 nm with a 700 nm reference, using a Sunrise™ absorbance reader (Tecan Group Ltd., Männedorf, Switzerland). Data were corrected for background, normalised with corresponding protein content, and presented as μg/mL for serum iron and μg/mg for hepatic iron.
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2

Measuring ADAMTS13 Activity in Febrile Plasma

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To measure the effects of febrile temperature and MPs, the ADAMTS13 activity was analyzed in 30 citrated plasma samples by CBA, as described with slight modifications [17 (link)]. Importantly, febrile plasma samples which were previously incubated at 38°C and 39°C in plasma preparation process would be incubated at 38°C and 39°C instead of 37°C in digestion step, respectively. The chromogenic reaction in the final process was performed by addition of 100 μl of substrate o-phenylene-diamine dihydrochloride (5 mg) (Med OPD P6912, Sigma Aldrich, USA). The ELISA reaction was stopped by addition of 100 μl H2SO4 (3%) and absorbance was read at 492 nm with reference length at 620 nm using Sunrise™ absorbance reader (Tecan Group Ltd. Switzerland). The ADAMTS13 activity in each sample was determined in duplicate.
Normal pooled plasma (NPP), which was collected from 30 healthy participants was used to generate a calibration curve. The NPP was diluted in to 7 dilutions, 1:5, 1:10, 1:20, 1:40, 1:80, 1:160 and 1:320 in 1.5 M urea, 5 mM Tris, pH 8.0. The ADAMTS13 activity was read from the sigmoid-like calibration curve using point-to-point plot. The NPP dilution of 1:10 was defined as 107% of ADAMTS13 activity.
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3

Colorimetric Assay for Plasma Haptoglobin

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The commercially available colorimetric Haptoglobin Kit (Phase™ Range TP801; Tridelta Development Ltd., Maynooth, Ireland) was used to measure haptoglobin concentration in plasma, based on its preservation of haemoglobin’s peroxidase activity. Following the manufacturer’s instructions, samples were loaded into a 96-well microplate and incubated with haemoglobin and chromogen. After 5 min, absorbance was measured at 620 nm with a 700 nm reference, using the Sunrise™ absorbance reader (Tecan Group Ltd., Männedorf, Switzerland). Sample haptoglobin was determined from a 0.039–2.5 mg/mL standard curve. Data were corrected for background and presented as mg/mL.
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4

Corneal Tissue Irritation Assay

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The following reagents, test systems and technical equipment were used: Spectrophotometer: Sunrise™ Absorbance Reader (Tecan Group Ltd., Switzerland; measurement using a filter wavelength of 570 nm without reference filter). MatTek Corp. (USA) and MatTek In Vitro Life Science Laboratories (Slovakia) provided the following reagents and test systems: EpiOcular™ OCL-200 kit (containing 24 OCL-200 reconstructed cornea tissues, 0.6 cm2 surface area, cultured in Millicells® with 1-cm diameter); Dulbecco‘s modified eagle’s medium (DMEM; also purchased from Sigma Aldrich, Germany); Dulbecco’s phosphate buffered saline (PBS) without Ca2+ or Mg2+ (also purchased from Biochrom, Germany); MTT (also purchased from Sigma Aldrich, Germany), and 1.0 mg/mL isopropanol.
Highly de-ionized water was used as negative control (NC) and methyl acetate (purity >98 %, Chemical Abstracts Service (CAS) No. 79–20–9, Merck KGaA, Germany) as positive control (PC).
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5

ELISA Quantification of IFN-γ and IL-10

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IFN-γ and IL-10 concentrations in cell culture supernatants were quantified by using the IFN gamma Mouse Uncoated ELISA Kit and the IL-10 Mouse Uncoated ELISA Kit (both Thermo Fisher Scientific), respectively, according to the manufacturer´s protocol. Samples were measured with the SUNRISE Absorbance Reader and analyzed utilizing the Magellan software (both Tecan Group, Männedorf, Switzerland).
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6

Quantifying Zinc Levels: Colorimetric Assay

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A colorimetric Zinc Assay Kit (MAK032; Sigma-Aldrich, St. Louis, MO, USA) was used to determine plasma and hepatic zinc concentrations. Following the manufacturer’s protocol, plasma and whole liver-homogenate samples were deproteinised with 7% trichloroacetic acid, briefly vortexed, and centrifuged at 13,000× g for 5 min. The resultant supernatants were loaded into 96-well microplates in duplicates. A zinc reagent mix was made according to the protocol and added to each well. Following incubation, absorbance was measured using the Sunrise™ absorbance reader (Tecan Group Ltd., Männedorf, Switzerland) at 560 nm, with 700 nm reference. Plasma and hepatic zinc concentrations were determined from a standard curve of 5–40 nmol/mL and 1.56–100 nmol/mL, respectively. Data were corrected for background and corresponding protein concentrations and presented as μg/μL for plasma zinc and ng/mg of protein for hepatic zinc.
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7

GlcN Effects on Osteoblast Viability

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The effect of GlcN on hOC and hOB viability was assessed using MTT colorimetric assays. The cells were seeded in 96-well plates, treated with increasing concentrations of GlcN (10, 100 and 200 µg/ml) maintained at 37°C. After 72 h of treatment, a solution of MTT in PBS was added to each well and the plate was incubated for 3 h at 37°C. The MTT crystals were solubilized with 200 µl lysis buffer (10% SDS). Spectrophotometric absorbance of each sample was then measured at 570 nm by using a microplate reader (Sunrise™ Absorbance Reader; Tecan Group, Ltd.). Live cells were calculated as a percentage of the control (untreated cells).
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8

Cell Proliferation Assay Using MTS

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Cells were seeded in 24-well plates at a density of 1×105 cells/well. Cell proliferation was investigated using an MTS assay on days 12, 14, 17, and 20, respectively. In brief, cells were added to 500 μL of MTS solution and incubated for 4 hours. After that, cells were washed with PBS and added to 500 μL of DMSO to remove the MTS solution. The optical density was measured at 570 nm using a Sunrise absorbance reader (Tecan Group Ltd., Shanghai, People’s Republic of China).
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9

Cardiovascular Biomarkers Quantification

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Plasma NT-proBNP and troponin T was measured by immunochemistry and ElectroChemiLuminescence ImmunoAssay, and plasma triglycerides, cholesterol and HDL measured by enzymatic reaction and photometry (all using Cobas 6000, Roche Diagnostics Scandinavia AB, Stockholm, Sweden). Serum Galectin-3 and ST2 were determined using ELISA and photometry (Sunrise absorbance reader, Tecan Group Ltd., Männedorf, Zürich, Switzerland). LDL and HDL/LDL ratio were estimated from total cholesterol and HDL.
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10

Corneal Opacity Evaluation of Nanoparticles

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The following technical equipment was applied: Corneal holders (LAB Research, Hungary, or BASF SE, Germany), opacitometer (BASF-OP2.0, BASF SE, Germany), spectrophotometer (Sunrise™ Absorbance Reader, Tecan Group Ltd. Switzerland, measurement using filter wavelength of 490 nm without reference filter). The following reagents were used (all supplied by Biochrom AG, Germany, unless otherwise noted): Hanks’ Balanced Salt Solution (HBSS) containing 1 % (v/v) Penicillin/Streptomycin (10 000 IU/10 000 μg/mL); Eagle’s Minimum Essential Medium (MEM) without phenol red containing fetal calf serum and 1 % (v/v) Penicillin/Streptomycin; Eagle’s MEM with phenol red, sodium fluorescein (Merck KGaA, Germany) diluted in PBS.
Highly de-ionized water was used as NC. For the materials that were supplied as dry-powder test items, imidazole (CAS No. 288–32–4; Sigma Aldrich, Germany) 20 % (w/v) dissolved in highly de-ionized water was used as PC. For Ag NM-300 K, its dispersant, Ag NM-300 K DIS, and aSiO2-susp 1 % (w/v) sodium hydroxide (Sigma Aldrich, Germany) diluted with highly de-ionized water was used as PC.
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