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12 protocols using anti dkk1

1

Comprehensive Protein Extraction and Western Blotting Protocol

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RIPA buffer (Beyotime) with 1% protease inhibitor cocktail (Roche Applied Science) was used for total protein extraction. For cytoplasmic and nuclear protein fractionation, a Nuclear and Cytoplasmic Protein Extraction Kit (Thermo Scientific, Catalog Number: 78833) was utilized. Next, 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) gels were used to separate proteins according to their molecular weights. Then, the proteins were transferred onto polyvinylidene fluoride (PVDF) membranes by electrophoresis. After blocking with 5% nonfat milk, the PVDF membranes were incubated with primary antibodies followed by horseradish peroxidase (HRP)-linked secondary antibodies. Enhanced chemiluminescence (ECL) reagent was used to detect the protein bands. The primary antibodies used for western blotting were as follows: anti-HOXC6 (Santa Cruz, sc-376330), anti-β-catenin (Abcam, ab32572), anti-DKK1 (Abcam, ab109416), anti-c-Jun (Cell Signaling Technology, #9165), anti-EMT antibody kit (Cell Signaling Technology, #9782), anti-RNF43 (Abcam, ab84125), anti-Axin2(CST, #5863S), anti-Histone H3 (Huabio, Hangzhou, M1306–4), and anti-β-tubulin (Huabio, Hangzhou, M1305–2). All the antibodies used in this study were detailed in Table S2.
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2

Western Blot Analysis of Prostate Targets

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Western blotting was performed as previously described (20 (link)). The protein was quantified by bicinchoninic acid assay (ThermoFisher), and each sample was loaded and separated on an SDS-PAGE gels according to kDa. After samples were transferred to the membrane, the primary antibodies used were as follows: anti-androgen receptor (1: 1000) (Santa Cruz, Biotechnology, Dallas, TX, USA), anti-5α-reductase type 2 (1: 500) (Abcam), anti-AR (1: 1000) (Abcam), anti- p-GSK-3β 1: 1000) (Abcam), anti-B-cell lymphoma-associated X (Bax) (1: 1000) (Abcam), anti-B-cell lymphoma 2 (Bcl-2) (1: 1000) (Santa Cruz), anti-poly (ADP-ribose) polymerase (PARP) (1: 1000) (Cell Signaling), anti-PCNA (1: 1000) (Abcam), anti-β-catenin (1: 1000) (Abcam), anti-TGF-β1 (1: 1000) (Santa Cruz), anti-DKK-1 (1: 1000) (Abcam). Proteins were expressed with an enhanced chemiluminescence detection kit (Amersham Pharmacia Biotech, Buckinghamshire, UK) and quantified using CS analyzer (ATTO, Tokyo).
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3

Protein Extraction and Western Blot Analysis

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RIPA buffer was used to extract total protein from HUFs, human and rat urethral tissues. BCA protein assay (Thermo Fisher Scientific) was performed to detect the protein concentration. Equal amounts of protein (20 µg) were separated by 10% SDS-PAGE gels and transferred to PVDF membrane (Millipore, USA). Next, the membranes were blocked in 5% fat-free milk for 2 h, and incubated with the following antibodies at 4 °C overnight: anti-Wnt3a (1:1000, Abcam), anti-β-catenin (1:1000, Abcam), anti-DKK1(1:1000, Abcam), anti-collagen I (1:1000, Abcam), anti-collagen III (1:1000, Abcam), anti-α-SMA (1:1000, Abcam), anti-p-GSK-3β (1:1000, Abcam), anti-GSK-3β(1:1000, Abcam), anti-p-Smad2(1:1000, Abcam), anti-p-Smad3 (1:1000, Abcam), anti-Smad2/3 (1:1000, Abcam) and anti-GAPDH (1:5000, Abcam, Cambridge, UK). Membranes were cut horizontally based on the differences of molecular weight. Then membranes washed with TBST (Beyotime Biotechnology, Shanghai, China) and incubated with corresponding secondary antibodies (goat anti-rabbit IgG H&L (HRP), 1:10000; rabbit anti mouse IgG H&L (HRP), 1:10000; Abcam, USA) at room temperature for 1 h. Additionally, membranes were stripped with Western Blot Stripping Buffer (Cell Signaling Technology), and re-probed with target proteins. Target blots signals were observed by an enhanced chemiluminescence-detecting kit (Thermo Fisher, MA, USA).
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4

Western Blot Analysis of Protein Markers

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Protein specimens were diluted in loading buffer and denatured at 95 °C. After electrophoresing on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), total protein (40 μg) was transferred onto the polyvinylidene difluoride membrane. Five percent skimmed milk was used to block the membrane at room temperature for 2 h. Primary antibodies including anti-β-catenin, anti-c-myc, anti-cyclin D1, anti-p62, anti-Beclin1, anti-DKK1, and anti-GAPDH, were purchased from Abcam (USA). The antibody against LC3I/II (#ABC929) was bought from Sigma-Aldrich (Saint-Louis, MO, USA). The membrane was incubated with the indicated antibodies overnight at 4oC, followed by washing and incubation with corresponding secondary antibodies (Abcam) for 2 h. At length, protein samples were subjected to an enhanced chemiluminescence detection system (Bio-Rad lab, Hercules, CA, USA). This assay was performed more than three times.
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5

Western Blot Analysis of Signaling Proteins

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RASFs were washed twice in cold PBS, and then lysed in RIPA lysis buffer (Beyotime Institute of Biotechnology Jiangsu, China). The protein concentration of cell lysates was quantified by a BCA Kit (Beyotime Institute of Biotechnology Jiangsu, China), and 50 μg of each protein were separated by SDS-PAGE on 10% gels, and then transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, USA). The membranes were blocked in 5% non-fat milk diluted with Tri Buffered Saline Tween-20 (TBST) at room temperature for 1 h and incubated overnight at 4 °C with primary antibody: anti-p21, anti-cyclin D1, anti-CDK4, anti-Bax (1:500; Cell Signaling Technology Inc., MA, USA); anti-DKK1, anti-PCNA, anti-MMP-2, anti-MMP-9 (1:1000; Abcam, USA). The membranes were then incubated with goat anti-rabbit or anti-mouse IgG conjugated to horseradish peroxidase secondary antibody (1:1000; Cell Signaling Technology Inc., MA, USA) for 2 h. The proteins were visualized using ECL-plus reagents (Amersham Biosciences Corp., USA). The density of the bands was measured using the Image J software (USA), and values were normalized to the densitometric values of α-tubulin (1:5000; Sigma, USA) in each sample.
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6

Western Blot Analysis of Wnt Signaling Proteins

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Cells were harvested in cell lysis buffer (Cell Signaling Technology; Cat#: 9803) and heated for 5 min at 100 °C. Equal quantities of denatured protein samples were resolved on 10% SDS-polyacrylamide gels and then transferred onto polyvinylidene difluoride membranes (Roche). After blocking with 5% non-fat dry milk in Tris-buffered saline/0.05% Tween 20 (TBST), the membrane was incubated with a specific primary antibody followed by a horseradish peroxidase-conjugated secondary antibody. Proteins were visualized using ECL reagents (Pierce). The antibodies used were as follows: anti-β-catenin, anti-DKK1, anti-NKD1 and anti-GSK3β (Abcam, Cambridge, MA, USA), and p-GSK3β (Ser9) (Cell Signaling Technology). The membranes were stripped and reprobed with an anti–α-tubulin antibody (Sigma-Aldrich, St. Louis, MO, USA) as the loading control.
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7

Protein Extraction and Western Blotting

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Whole cells were lysed using RIPA buffer (10 mM Tris-HCl, pH 7.4, 0.15 M NaCl, 0.5% sodium dodecyl sulfate, 1% NP-40, 1% Na-deoxycholate, 1 mM EDTA, 1 mM phenylmethanesulfonyl fluoride, 1 μg/mL of pepstatin, and 1 μg/mL of leupeptin). Secretory protein was extracted by precipitation with trichloroacetic acid. Western blot analysis was performed with anti-PGE-2, anti-AKT, anti-PI3K, anti-GSK-3β, anti-β-catenin, anti-DKK-1, anti-SOST, or anti-β-actin antibodies (all from Abcam, Cambridge, UK).
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8

Comprehensive Protein Expression Analysis

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Western blotting analysis was performed as described previously [23 ]. Primary antibodies used were as follows: anti-β-catenin (1:1000), anti-C-MYC (1:1000), anti-AXIN2 (1:1000), anti-DKK1 (1:1000), anti-Nanog (1:1000), anti-BMI1 (1:1000), anti-BAX (1:1000), anti-BCL2 (1:1000), and anti-GAPDH (1:5000) (all from Abcam).
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9

Protein Expression Analysis in Cutaneous Squamous Cell Carcinoma

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The cSCC cells or frozen tumour tissues were lysed by RIPA lysis buffer. Proteins were extracted, measured and analysed by western blotting. Briefly, 40 μg per lane of protein was separated by 10% (w/v) sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred onto a polyvinylidene fluoride membrane. Then, 5% (w/v) bovine serum albumin (BSA) was used to block nonspecific binding in the membrane. After washing with Tris buffered saline with Tween buffer, membranes were incubated overnight at 4°C with primary antibodies. Primary antibodies included anti‐C3 (1:800; Abcam, Cambridge, MA, USA), anti‐cyclin D1 (1:800; Abcam), anti‐cyclin E1 (1:800; Abcam), anti‐VEGF (1:800; Abcam), anti‐pro‐MMP1 (1:800; Abcam), anti‐pro‐MMP2 (1:800; Abcam), anti‐Sox‐2 (1:800; Abcam) and anti‐DKK‐1 (1:800; Abcam). Horseradish‐peroxidase‐conjugated secondary antibody was then added, and cells were incubated for 2 hours at room temperature. Signals of target protein were visualized by incubating the membranes with chemiluminescence reagents and then quantifying with the ImageJ program (National Institutes of Health, Bethesda, MD, USA). Β‐actin was used as the loading control for normalization.
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10

Protein Expression Analysis in Cells

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Cells were harvested and lysed for total protein in RIPA lysis buffer (Thermo Scientific, EU, Lithuania) with protease inhibitors. Proteins were separated by sodium dodecyl sulfate polyacrylamide gel (SDS-PAGE) and subsequently transferred to polyvinylidene fluoride (PVDF) membrane. Membranes were then incubated with anti-DLX3, anti-CyclinD1, anti-C-myc, anti-Tcf-7, anti-DKK1, anti-β-actin, anti-GAPDH (all from Abcam, Cambridge, MA, United States), and anti-active-β-catenin antibodies (Millipore, Burlington, MA, United States) overnight at 4°C. Horseradish peroxidase (HRP)-conjugated secondary antibodies (1:10,000) and chemiluminescence substrate were used to detect the immunoreactive bands with autoradiography film. Protein levels were quantitatively analyzed with Image J (National Institutes of Health, Bethesda, MD, United States) with β-actin as the loading control.
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