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17 protocols using stage incubator

1

Photoactivation of Microtubules in Neurons

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Live cell imaging and photoactivation experiments were performed on an inverted Nikon Eclipse Ti‐E confocal microscope equipped with a perfect focus system (Nikon), a CSU‐X1‐A1 Spinning Disc unit (Yokogawa) and a Photometrics Evolve 512 EMCCD camera (Roper Scientific) while using a Plan Apo VC 100× N.A.1.40 oil objective. Neurons were kept at 37°C and 5% CO2 in a stage incubator (Tokai Hit) during imaging. Movies used to determine MT growth velocity were acquired at a frame rate of 1 frame per second, and acquisitions lasted 3 min per movie.
For photoactivation experiments, we made use of an ILas FRAP unit (Roper Scientific) and a Vortran Stradus 405 nm (100 mW) laser. The photoactivation procedure of paGFP‐α‐Tubulin was previously described 45. We co‐transfected neurons with GW2‐mRFP to label transfected neurons and identified axons based on morphology. We placed the soma just outside the field of view, which spanned 34 μm in total, and photoactivated axon regions of approximately 6–7 μm wide in the centre of the image. To prevent excessive photobleaching, frames were acquired at intervals varying between 6 and 15 min.
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2

Live-cell Imaging of Transfected Cos7 Cells

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A confocal laser-scanning microscope (FV3000, Olympus Corporation) equipped with a stage incubator (TOKAI HIT Corporation, Shizuoka, Japan) was used for live-cell imaging. The lateral spatial resolution is ~200 nm under optimised operation. All observations were performed at 37 °C, under 5.0% CO2. Cos7 cells were seeded on a 30-mm glass-bottom dish with 40% density and transfected with the vectors mentioned earlier 24 h before imaging. Time-lapse fluorescence images were captured every 5 s and analysed with ImageJ (ver 1.52a; https://imagej.nih.gov) and the GIMP software (ver 2.10.18).
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3

Gamma-Irradiated Fungal Conidia Germination

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The germination rate and start time as well as the hyphal length of the gamma ray-irradiated conidia were determined. The treated conidia solution was suspended in PDB, and 3 ml of aliquot was inoculated in a 35 mm φ plastic dish. Conidia were observed using a phase-contrast microscope (NIKON, Japan, objective lens ×20) equipped with a stage incubator (Tokai HIT, Japan). Briefly, the culture dish was placed in an incubator (25°C) installed on the stage, and microscopic images were continuously generated during incubation in time-lapse mode using a digital camera (NIKON, Japan) every hour for 3 days. From the acquired images, the mycelial length elongating from each conidiophore was determined using the image-processing software Image-Pro (Roper, Japan). The germination rate was calculated by dividing the number of segments from which the emergence of germination tubes was clearly observed at each time point by the total number of segments (200–300 conidia).
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4

Dynein-Driven Microtubule Gliding Assay

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A quantity of 0.4 μM dynein was added to a 5 mg/ml BSA precoated flow chamber (Matsunami Glass, Osaka, Japan) and adsorbed onto the bottom for 5 min. A total of 10.5 mg/ml TMR-labeled tubulin and 7.64 mg/ml white tubulin were polymerized at a ratio of 1:40 and stabilized in 50 μM Taxol (Sigma)/BRB80 buffer (40 mM PIPES, pH 7.2, 0.5 mM MgSO4, and 0.5 mM EGTA). The MT solution was diluted to 0.5 μM in ATP buffer (1 mM ATP and 100 μM Taxol) with oxygen scavenger (225 μg/ml glucose, 216 μg/ml glucose oxidase, 36 μg/ml catalase, and 1% 2-mercaptoethanol) and introduced into the flow chamber. Following confirmation of MT gliding by cytoplasmic dynein (0.5 μM), recombinant proteins (p80; 0.4 μM, Δ1-56 aa; 0.4 μM, p.G33W; 0.4 μM, p.S535 L; 0.4 μM, p.L540R; and 0.4 μM, BRB80) were added. MT gliding was observed via conventional inverted fluorescence microscopy (Olympus IX71, Tokyo, Japan) with an oil-immersion objective lens (UPlanSAPO, 100X, NA = 1.4, Olympus, Tokyo, Japan) and an EMCCD camera (ImagEM, Hamamatsu Photonics, Hamamatsu, Japan). Captured images were analyzed with AquaCosmos software (Hamamatsu Photonics, Hamamatsu, Japan). All experiments were performed at 37 °C with a stage incubator (Tokai-Hit, Shizuoka, Japan).
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5

In Vitro Cell Migration Assay

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To analyze cellular in vitro migration by using a scratch assay, cells were seeded in cell culture chamber slides and incubated at 37°C under 5% CO2 and 95% air atmosphere. When they reached 100% confluence, a straight artificial gap was created in the middle of the chamber. In order to smooth the edges of the scratch and remove floating cells, the cells were washed with medium several times. Afterward the medium was removed and replaced by medium supplemented with 1,8-cineol. Untreated cells were used as negative control. Photographs of the migrating cells were taken every 15 min by a microscope (Keyence, Osaka, Japan) with stage incubator (Tokai Hit, Shizuoka, Japan) as well as multipoint and time lapse function.
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6

Live-Cell Imaging of Subcellular Dynamics

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Live-cell imaging experiments were performed on an inverted Nikon Eclipse Ti–E confocal microscope equipped with a perfect focus system (Nikon), a CSU–X1–A1 Spinning Disc unit (Yokogawa), a Photometrics Evolve 512 EMCCD camera (Roper Scientific) and a Plan Apo VC 100× N.A.1.40 oil objective. Coverslips were mounted in a Ludin chamber (life imaging services) and maintained in culture medium at 37°C and 5% CO2 in a stage incubator (Tokai Hit) during image acquisition.
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7

Imaging Na+V Channel Trafficking in DRG Neurons

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All Halo-tag ligand– and SNAP-tag ligand–conjugated Janelia Fluor labels were generous gifts of L.D. Lavis and J.B. Grimm (Janelia Research Campus).
All live-cell experiments were performed at 37 °C using a stage incubator (Tokai Hit). During labeling and imaging, neurons were kept in DRG neuronal imaging saline (NIS) containing 136 mM NaCl, 3 mM KCl, 1 mM MgSO4, 2.5 mM CaCl2, 0.15 mM NaH2PO4, 0.1 mM ascorbic acid, 20 mM Hepes, and 8 mM dextrose (pH 7.4) with NaOH (adjusted to 320 mOsm/l).
DRG neurons transfected with Halo-NaV1.7 were cultured in MFCs for 5 to 7 days. Cell-impermeable Halo-tag ligand JF635i (100 nM) was added to the somatic chamber for 15 min and then removed by washing the chamber 3× with NIS.
For time lapses of NaV channel trafficking (Fig. 2), multiple fields of view containing distal axons with labeled NaV1.7 channels were selected and imaged sequentially, one image per field, every ∼4 s for 900 frames. Cells that were treated with ciliobrevin D (20 μM final concentration, stock solution was made in dimethyl sulfoxide immediately prior to use; Millipore) were exposed from the start of labeling and throughout the experiment.
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8

FRAP Analysis of EGFP-MLC Dynamics

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Cells expressing EGFP-MLC were cultured on a glass-bottom dish in a stage incubator (Tokai Hit). FRAP experiments were performed using a confocal microscope (FV1000, Olympus) with a 60× oil immersion objective lens on cells treated in advance with siRNAs for control or for eEF2 for 36 h before the experiments. Photobleaching was induced using the 405/440-nm-wavelength lasers on individual EGFP-MLC-labeled SFs, and images were taken for 4 min at a 5-s-interval. The recovery curve was fitted to a single exponential function by the least-squares method, by which the steady-state value of the fluorescence intensity, i.e., mobile fraction, was computed to measure the instability of SFs.
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9

Biotinylated Na_V1.7 Channel Labeling

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All experiments were performed at 37°C using a stage incubator (Tokai Hit, Shizuoka, Japan). Neurons were kept in DRG-NIS containing 136 mM NaCl, 3 mM KCl, 1 mM MgSO4, 2.5 mM CaCl2, 0.15 mM NaH2PO4, 0.1 mM ascorbic acid, 20 mM Hepes, and 8 mM dextrose (pH 7.35) with NaOH (adjusted to 320 mosmol/liter) during incubation and imaging. Surface labeling of biotinylated channels was performed as previously described (25 (link), 58 (link)). Briefly, neurons cotransfected with Venus-NaV1.7-BAD and BirA (to biotinylate the lysine residue in the BAD) were plated on 35-mm glass bottom dishes or MFCs. Neurons were washed with DRG-NIS to remove medium that may contain biotin and decrease efficacy of labeling and then incubated with 1.2 nM streptavidin-conjugated fluorophore Streptavidin-CF640 (SA-CF640) (Biotium) or streptavidin-conjugated Alexa Fluor 568 (SA-568) (Thermo Fisher Scientific) for 20 min to label the biotinylated surface channels. Cells were washed three times with DRG-NIS and then imaged for up to 1 hour after labeling.
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10

Halo-NaV1.7 Axonal Labeling in DRG Neurons

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All experiments were performed at 37°C using a stage incubator (Tokai Hit). Neurons were kept in DRG neuronal imaging saline (DRG-NIS) containing (in mM): 136 NaCl, 3 KCl, 1 MgSO4, 2.5 CaCl2, 0.15 NaH2PO4, 0.1 ascorbic acid, 20 HEPES, 8 dextrose, pH 7.35 with NaOH (adjusted to 320 mOsmol/l) during incubation and imaging. To surface label Halo-Nav1.7 channels, the culture media in the axonal chamber was removed by washing with NIS, then 100 nM cell-impermeable HaloTag-JF635i ligand (kind gift from Luke D. Lavis and Jonathan B. Grimm, Janelia Research Campus)16 (link),17 (link) was added for 20 min. Axons were washed three times with DRG-NIS, then imaged for up to 1 h after labelling. Analysis of axonal endings (Fig. 1) was performed on images acquired using the 20× objective. All other data were acquired using the 60× objective.
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