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Origin analysis software

Manufactured by OriginLab
Sourced in United States

Origin is a data analysis and graphing software. It provides tools for data manipulation, curve fitting, and creating publication-quality graphs and plots. The core function of Origin is to enable users to visualize, analyze, and present data in a variety of formats.

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3 protocols using origin analysis software

1

Apoptosis Assay for Paclitaxel and EPO Treatment

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Annexin V and caspase 3/7 activity. Cells seeded on a 96-well plate (3,000 cells/well in 100 µl/well) in triplicates were allowed to adhere overnight. Annexin V reagent (Incucyte Annexin V Green Reagent for Apoptosis; Essen Bioscience, final dilution of 1:200) or Caspase 3/7 reagent (Incucyte Caspase 3/7 Green Apoptosis Reagent; Essen Bioscience, final dilution of 1:1,000) were added together with paclitaxel and/or EPO 72 h after cell seeding and EPOR silencing (experimental groups with siRNA and nt siRNA against EPOR). The rate of activation of Annexin V and both caspase 3/7 in cells was monitored with the Incucyte ZOOM system every 1 h after treatment of the cells. Plates were pre-warmed prior to data acquisition to avoid condensation and expansion of the plate, which would hinder autofocus. The maxima of excitation and emission were 490/515 nm and 500/530 nm for Annexin V and caspase 3/7, respectively. Images of wells of the 96-well plate were collected by Nikon 20x objective. Incucyte ZOOM integrated software (Essen Bioscience) was used to minimize background fluorescence and quantify fluorescent objects.
Statistical analysis. The data were statistically analyzed using ANOVA followed by Tukey's multiple comparison tests in ORIGIN analysis software (OriginLab Co., Northampton, MA, USA). The results were considered significant at the probability level P<0.05 and P<0.01.
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2

Visualizing Nucleoid Transport Dynamics

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To visualize nucleoids transportation relative to MDT, Cos-7 cells expressing markers for the mitochondria and mitochondrial nucleoids were imaged every 1 s for up to 2 min in a single focal plane. We used the ImageJ plugin Manual Tracking to track MDT and mtDNA trajectories, and performed cross-correlation analyses between MDT and mtDNA movements by using the corrcoef function in Matlab (Mathworks). MSD fitting was performed with Origin analysis software (OriginLab).
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3

Raman Analysis of Femur Cortical Bone

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After the three-point bending test, the broken left femurs were collected. A segment of cortical bone of the femur along the horizontal plane was excised. After alcohol dehydration, the embedding process in epoxy resin and grinding, the samples for Raman spectroscopy (RS) were obtained. A Raman microscope (Horiba LabRAM, France) with a 785-nm wavelength laser source was adopted to obtain the spectra of femur cortical tissue. The laser was focused on a cross section of the femur cortex with a 50× magnification objective. The average of spectra obtained from three different sites of the femur cortex were employed to reflect the composition of the bone matrix. Curve fitting of Raman spectra was performed with Origin analysis software (OriginLab, USA), and the band area was calculated. The definition and calculation of the main Raman spectra-based compositional parameters in this study are described below: mineral-to-matrix ratio (area of v1PO43− [960 cm−1] band: area of Amide I [1660 cm−1] band), carbonate to phosphate ratio (area of v1CO32− [1060 cm−1] band: area of v1PO43− [960 cm−1] band), mineral crystallinity (inverse of v1PO43− [960 cm−1] band width at half-maximum intensity).
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