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Rabbit anti hmgb1

Manufactured by Abcam
Sourced in United Kingdom, United States

Rabbit anti-HMGB1 is a primary antibody that binds to the High Mobility Group Box 1 (HMGB1) protein. HMGB1 is a highly conserved nuclear protein involved in the regulation of transcription. This antibody can be used for the detection and quantification of HMGB1 in various applications, such as Western blotting and immunohistochemistry.

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21 protocols using rabbit anti hmgb1

1

Immunohistochemical Visualization of HMGB1 in Rat Hippocampus

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Rats were deeply anesthetized with pentobarbital and transcardially perfused with 4% paraformaldehyde (PFA) at desired time points post-eFSE. Brains were removed and post-fixed in 4% PFA for 90 min. Brains were then cryoprotected in 30% sucrose, rapidly frozen, and stored at −80°C. Thirty micrometer sections of dorsal hippocampus were obtained on a cryostat and stored in antifreeze at 4°C until use. Serial sections were blocked in 10% normal goat serum and 0.03% Triton X in 1× PBS for 1 h at 4°C. Primary antibodies were incubated in 4% normal goat serum with 0.03% Triton X overnight at 4°C. The following antibodies were used: rabbit anti-HMGB1 1:1000 (Abcam), mouse anti-GFAP 1:3000 (Millipore), and mouse anti-IBA1 1:4000 (Wako). Sections were washed with 1× PBS, and the reaction product was visualized using 3,3'-diaminobezidine. Colocalization of cell markers with HMGB1 was achieved by coincubating rabbit anti-HMGB1 1:1000 (Abcam) with the following antibodies: mouse anti-NeuN (Chemicon), mouse anti-GFAP 1:3000 (Millipore), and mouse anti-CD11b (ABD Serotec). After 24 h of incubation, sections were washed in 1× PBS and then incubated in the appropriate secondary antibodies conjugated with Alexa Fluor 568 or Alexa Fluor 488. Colocalization was visualized using confocal microscopy.
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2

Quantifying HMGB1 and ET1 in Lung Tissue

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Protein was drawn from 20 mg lung tissue on ice by treatment with lysis buffer and phenylmethanesulfonyl fluoride (both from Beyotime, Shanghai, PRC). Protein supernatants were centrifuged at 10,000 rpm for 10 minutes (4°C) to remove tissue fragments of the sediments. Protein concentrations were determined using a Bio-Rad protein-assay instrument, and the protein was boiled with loading buffer. Equal amounts of protein from all the lung tissues were dissolved in sodium dodecyl sulfate (SDS) polyacrylamide-gel electrophoresis (PAGE) sample buffer, separated in SDS-PAGE, and transferred onto polyvinylidene fluoride membranes. The membranes were incubated with the respective primary antibodies (rabbit anti-HMGB1 and rabbit anti-ET1; both from Abcam PLC, Cambridge, UK) overnight at 4°C after being blocked with 5% fat-free milk for 2 hours. The blots were incubated with secondary antibodies conjugated to horseradish peroxidase for 1 hour at room temperature with continuous shaking. After washing, the protein blots were detected using an enhanced chemiluminescence kit (EMD Millipore, Billerica, MA, USA) and exposed to X-ray film. Bands were quantified using FluorChem 9900 (ProteinSimple, San Jose, CA, USA), and β-actin was used as an internal reference.
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3

Western Blot Analysis of HMGB1 in LC

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HMGB1 protein levels in LC brain homogenates were determined by western blot analysis, and normalized to a GAPDH loading control. 20μg of each homogenate was separated by SDS-PAGE, transferred to a PVDF membrane, and blocked using Blok fluorescent blocker (Millipore, Billerica, MA). The PVDF membranes were incubated with rabbit anti-HMGB1 (1:5000) and mouse anti-GAPDH (1:1000; Abcam, Cambridge, MA) overnight at 4°C. The secondary antibodies goat anti-rabbit Dylight 680 and goat anti-mouse Dylight 800 (Thermo Fisher, Waltham, MA) were diluted 1:5000. HMGB1 and GAPDH bands were quantitated using LI-COR Odyssey Image Studio software (LI-COR, Lincoln, NE).
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4

Imaging of Poly(ADP-ribose) Formation in Cells

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For PAR IF analysis 1.5 × 105 NIH/3T3 or 2.5 × 104 MEF, MRC-5, or IMR-90 cells were grown on coverslips overnight, prior to 1 h pre-incubation with inhibitors and subsequent H2O2 treatment. After the indicated time of treatment, cells were washed once with phosphate buffered saline (PBS), fixed with ice-cold methanol and acetic acid (3:1) for 10 min at 4°C, washed three times with PBS, blocked in 5% milk/0.05% Tween-20 in PBS for 30 min and stained immunohistochemically with primary mouse anti-poly(ADP-ribose) IgG (10H, made in-house), rabbit anti-poly(ADP-ribose) (Enzo), mouse anti-myc (Santa-Cruz) or rabbit anti-HMGB1 (abcam). Next, cells were washed three times with PBS before hybridization with a secondary antibody (Cy3 conjugated anti-mouse IgG, Jackson ImmunoResearch or Alexa Fluor 488 conjugated anti-rabbit IgG, Invitrogen). All antibodies were used at a dilution of 1:250. After incubation, cells were mounted on glass slides using DAPI-containing VECTASHIELD (Vector Labs) and images acquired using an inverted fluorescence microscope at 40×, oil immersion (Leica). Fluorescence intensities were quantified using ImageJ (v. 1.46r) or Imaris (v. 7.6.0, Bitplane) and equal set-up between the images and experiments.
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5

Protein Extraction and Western Blot Analysis of VSMCs

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Individual groups of VSMCs were harvested and lysed in RIPA (Radio Immunoprecipitation Assay) buffer containing protease inhibitor cocktail (Roche, Basel, Switzerland), followed by centrifuging. Furthermore, the nuclear and cytoplasmic cellular proteins were extracted using the nuclear and cytoplasmic protein extraction kit (Beyotime, Nantong, China). After quantification of protein concentrations, the cell lysate or protein samples (20 μg/lane) were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE) on 8% to12% gels and transferred to polyvinylidene difluoride membranes (Millipore, Bedford, MA). The membranes were blocked with 5% non‐fat dry milk in TBST and incubated with primary antibodies overnight at 4°C. The primary antibodies included rabbit anti‐β‐actin, anti‐LAMIN B1 (Cell Signaling Technologies, Beverly, MA), rabbit anti‐NLRP3, anti‐caspase‐1, anti‐LXRα, anti‐ABCA1 (Sigma‐Aldrich), rabbit anti‐HMGB1 (Abcam, MA) and rabbit anti‐CD36 (Abcam, MA). After being washed, the bound antibodies were detected with horseradish peroxidase (HRP)‐conjugated anti‐rabbit IgG and visualized using the enhanced chemiluminescent reagents (Millipore). The relative levels of target protein to the control β‐actin or LAMIN B1 expression were determined by densitometric analysis using a GE ImageQuant Las 4000 mini.
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6

Detecting Protein Biomarkers in BALF

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BALF were separated by SDS-PAGE, transferred to PVDF membranes, and probed with rabbit anti-mSP-D (Abcam), rabbit anti-HMGB1 (Abcam), rabbit anti-mReg3γ (Abgent), or goat anti-mIL-1β (R&D Systems).
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7

Detecting Acetylated HMGB1 in Culture Medium

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Immunoprecipitation was performed to detect the status of acetylated HMGB1 in culture medium using a catch and release kit (Millipore, USA) according to the manufacturer’s instructions. Briefly, a total 250 µl of culture medium from each sample was incubated with 5 µg of antibodies against acetyl-lysine (Cell Signaling, USA) and 10 µl affinity ligand for 1 hr at room temperature. Proteins were eluted in its native form and subjected to Western blot analysis. The blots were probed with rabbit anti-HMGB1 (1∶500, Abcam).
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8

Cell Death Pathway Analysis

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The following reagents were obtained commercially: rabbit anti-caspase-3 from Cell Signaling Technology (Danvers, MA, USA); rabbit anti-HMGB1 from Abcam (Cambridge, UK); mouse anti-β-actin, H2O2, t-BHP, propidium iodide (PI), STS, Necrostatin-1 (Nec-1), 3-Aminobenzamide (3AB), 3,4-dihydro-5-[4-(1-piperidinyl)butoxyl]-1(2H)-isoquinolinone (DPQ), poly-l-lysine, nicotinamide adenine dinucleotide (NAD), SI and 50% glutaraldehyde from Sigma-Aldrich (Saint Louis, MO, USA); horseradish peroxidase (HRP)-conjugated anti-mouse antibody, HRP-conjugated anti-rabbit antibody, fluorescein (FITC)-conjugated anti-mouse antibody and 4′,6-diamidino-2-phenylindole (DAPI) from Thermo Fisher Scientific (Rockford, IL, USA); mouse anti-RIPK1 antibody, mouse anti-PARP-1 antibody, and Annexin V from BD Biosciences (San Jose, CA, USA); rabbit anti-RIPK3 antibody and mouse anti-AIF antibody from Santa Cruz Biotechnology (Dallas, TX, USA); rabbit anti-PAR antibody from Trevigen (Gaithersburg, MD, USA); mouse anti-PAR antibody from Enzo Life Sciences (Farmingdale, NY, USA); z-VAD-fmk from Millipore (Darmstadt, Germany); olaparib from Selleck Chemicals (Houston, TX, USA); UPF-1069 and XAV-939 from Tocris Bioscience (Minneapolis, MN, USA); and MNNG from Tokyo Chemical Industry (Tokyo, Japan).
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9

Molecular Profiling of Hemorrhagic Stroke

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Brain tissue from the whole hemorrhagic hemisphere was obtained 24 hours after ICH. Twenty-microgram protein samples were separated by 4–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. The membranes were probed with the following primary antibodies: rabbit anti-HMGB1 (1:500, Abcam, Cambridge, MA), rabbit anti-Src (1:1000, Cell Signaling Technology, Danvers, MA), rabbit anti-phospho-Src (Tyr416, 1:1000, Cell Signaling), rabbit anti-cyclooxygenase (COX)-2 (1:100, Cayman Chemical, Ann Arbor, MI), rabbit anti-interleukin (IL)-1β (1:200, Abcam), and rabbit anti-β-actin (1:5000, Abcam). Resulting protein bands were scanned and analyzed with ImageJ software. Data were expressed as fold change over the loading control. We examined five brains per treatment group and three brains per sham group.
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10

Autoantigen Detection by ELISA

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ELISA was performed as described above. Antibodies detecting several autoantigens [mAb #34: mouse anti-histone H3 (32 (link)); mAb #42: mouse anti-DNA; mAb BT131: mouse anti-apoptotic nucleosome (33 (link)); mAb BT164: mouse anti-H3-K27me3 (34 (link)); mAb KM-2: mouse anti-H4-AcK8,12,16 (35 (link)); mAb LG11-2: mouse anti-H2B-AcK12 (36 (link)); rabbit anti-HMGB1 (Abcam, Cambridge, UK)] were added at the indicated concentrations in PBS-T (containing 1% BSA) and incubated for 1 h at RT. The respective secondary antibodies, goat anti-mouse IgG Fc HRP-conjugated (Jackson ImmunoResearch, Suffolk, UK), goat anti-rabbit IgG Fc HRP-conjugated (Southern Biotech, Birmingham, AL, USA), and goat anti-human IgG Fc HRP-conjugated (Southern Biotech, Birmingham, AL, USA) were added (1:10,000 in PBS-T, 1% BSA) for 1 h at RT.
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