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15 protocols using phenol red free rpmi 1640

1

Cell Line Maintenance and Authentication Protocol

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PNT1A, LAPC-4, 22RV1, PZ-HPV7, RWPE-1, and HEK293 were purchased from American Type Culture Collection (ATCC, Manassas, VA) and were maintained in medium according to ATCC instruction. C4-2 was originally generated by our lab. In addition, LN95 cell was provided by Dr. Jun Luo (Johns Hopkins Medical School) and maintained in Phenol red-free RPMI 1640 (Life Technologies, Carlsbad, CA) with 10% Charcoal-stripped Fetal bovine serum (CS-FBS). C4-2 and PNTA1 were maintained in RPMI 1640 (Life Technologies) supplemented with 10% FBS. LAPC-4 was cultured in Iscove’s-Dulbecco’s Modified Eagle’s Medium (I-DMEM; Life Technologies) with 10% FBS. VCaP was generously provided by Dr. Ralf Kittler (UT Southwestern Medical Center) and maintained in Dulbecco’s Modified Eagle’s Medium (DMEM; Life Technologies) containing 10% FBS. Cell lines were passaged in our laboratory for fewer than 40 times after resuscitation. Cell lines were authenticated using AmpFLSTR®Identifier® PCR Amplification kit (Life Technologies) and confirmed as mycoplasma-free using MycoAlert® kit (Lonza Walkersville, Inc. Walkersville, MD). All the antibodies used in this study were purchased from several commercial sources listed in Supplemental Table S1.
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2

Characterization of Immune Cell Populations

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We purchased the following tissue culture reagents from Life Technologies (Carlsbad, CA): RPMI 1640, Phenol Red-free RPMI 1640, Dulbecco’s Modified Eagle Medium, fetal calf serum, GlutaMAX, sodium pyruvate, Non-essential amino acids, penicillin/ streptomycin, Hank’s buffered saline solution (HBSS), nigericin, valinomycin, fluorescein dextran (average molecular weight 3,000 Daltons), Texas Red dextran (average molecular weight 3,000 Daltons) and SYTOX red. Recombinant IFN-γ, TNF-α and M-CSF were purchased from Peprotech, Inc (Rocky Hill, NJ). Recombinant IL-4 as well as APC-cy7 conjugated anti-CD11c (clone N418), perCP-cy5.5 conjugated anti-CD45 (clone 30F11) and PE-cy7 conjugated anti-Gr-1 (clone RB6-8C5) were from Biolegend (San Diego, CA). Sabouraud Dextrose broth and agarose were purchased from BD biosciences (San Jose, CA). Normal mouse serum was from Innovative Research (Novi, MI). Fluconazole was purchased from Sigma-Aldrich Corporation (St. Louis, MO). Uvitex-2B was purchased from Polyscience, Inc (Warrington, PA). Glass bottom culture dishes (catalog # P35G-1.5-14-C) were from Mat-tek Corporation (Ashland, MA). Dextran doubly-conjugated with fluorescein plus sulfarhodamine 101 (average molecular weight approximately 10,000 Daltons) was a custom product purchased from TdB Consultancy (Uppsala, Sweden).
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3

Culture Methods for Cell Lines

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Culture methods and target cells are summarized in Table 1. BEAS-2B (No. CRL-9609; ATCC, Manassas, VA) immortalized human lung epithelial cells were cultured in BEGM media with a Single Quot supplement kit (No. CC-3170; Lonza, Basel, Switzerland) at 37°C in 5% CO2. LNCaP (No. CRL-1740; ATCC) human prostate adenocarcinoma cells were cultured using phenol-red free RPMI-1640 (No. 11835; Life Technologies, Grand Island, NY) with 10% fetal bovine serum (FBS) and penicillin/streptomycin at 37°C in 5% CO2. PLHC-1 (No. CRL-2406; ATCC) fish (Poeciliopsis lucida) hepatoma cells were cultured using EMEM media (No. 30–2003; ATCC) with 5% FBS and penicillin/streptomycin at 30°C in 5% CO2.
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4

Cell Line Cultivation Conditions

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T47D-KBluc and MDA-MB-453 cell lines were obtained from the American Type Culture Collection (Manassas, VA, USA). The MCF7 and HeLa cell lines were a gift from Dr Sandra Dunn (Division of Hematology and Oncology, Department of Pediatrics, University of British Columbia, Vancouver, BC, Canada). TamR cell lines TamR3 and TamR6 were kindly provided by Dr Euphemia Leung (University of Auckland, New Zealand) [45 (link)]. Cells were cultured at 37°C in a humidified incubator with 5% CO2. The cell lines were maintained in the following culture media: for MCF7, phenol red–free RPMI 1640 (Gibco/Life Technologies, Grand Island, NY, USA) supplemented with 10% foetal bovine serum (FBS) (Gibco/Life Technologies); for T47D-KBluc, phenol red–free RPMI 1640 containing 4.5 g/L glucose (Sigma-Aldrich, St Louis, MO, USA), 10 mM 4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid (Sigma-Aldrich), pH 7.5, 1 mM sodium pyruvate (Life Technologies), 0.2 U/ml insulin (Sigma-Aldrich) and 10% FBS; for MDA-MB-453 and HeLa, Dulbecco’s modified Eagle’s medium (HyClone Laboratories/GE Healthcare Life Sciences, Logan, UT, USA) supplemented with 10% FBS (Gibco/Life Technologies); and for TamR3 and TamR6, phenol red–free RPMI 1640 containing 10% charcoal-stripped serum (CSS) (Gibco/Life Technologies) and 1 μM tamoxifen (Sigma-Aldrich).
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5

Cell Culture Practices for 293T, T47D, and MCF7

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293T, T47D and MCF7 cells were purchased from American Type Culture Collection (ATCC). 293T cells were cultured in DMEM (GIBCO #11995–065) with 10% fetal bovine serum (Gemini #100–119). T47D cells were cultured in Phenol Red-free RPMI-1640 (GIBCO #11835–030) with 10% FBS. MCF7 cells were cultured in Phenol Red-free MEM-α (GIBCO #41061–029) with 10% FBS. We used cell lines of passage number ranging from 4 to 15 in the described experiments. All cell lines tested negative for Mycoplasma contamination by ATCC Universal Mycoplasma Detection Kit. The last test was performed in November 2019.
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6

Comparative Cytotoxicity Evaluation of Breast Cancer Cell Lines

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MDA-MB-468 (5000 cells/well), HCC70 (5000 cells/well), MCF-7 (3000 cells/well), MDA-MB-231 (2000 cells/well), ZR-75-1 (4000 cells/well), and MCF-10A (3000 cells/well) in exponential growth were plated into 96-well culture plates and allowed to adhere overnight. The number of viable cells was assessed by spectrophotometry at 490 nm using a BioTek Synergy4 microplate reader after 3-days treatment, and calculated as the percentage of absorbance of treated cells relative to that of solvent controls.
For SKOV3 WT/KO cells (30,000 cells/well) were plated in a 96-well plate. The following day, media was aspirated and replaced with 100 μl phenol-red free RPMI-1640 (Gibco) and 12mM Methyl thiazolyldiphenyl-tetrazoliumbromide (MTT, Thermo Fisher Scientific) was added to the cells. After 4 hours, the media containing MTT was aspirated and 50 μl DMSO was added to dissolve the formazan and read at 540nm.
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7

Antibody Reagents for Molecular Studies

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The primary antibodies for NCAPD3 and PCLAF were obtained from Santa Cruz Biotechnology (CA, USA). Other primary antibodies for STAT3, AR, MYC, EZH2, AGO2, Ki67, β-actin and the secondary antibodies, including HRP Goat Anti-Mouse IgG and HRP Goat Anti-Rabbit IgG, were obtained from ABclonal Technology (Hubei, China). MALAT1-IN-1 and Stattic were purchased from MedChemExpress (NJ, USA). Mibolerone (Mib) was purchased from Sigma Aldrich (MO, USA). Charcoal-stripped serum (CSS) was purchased from Biological Industries (Beit Haemek, Israel). Phenol red-free RPMI 1640 was purchased from Gibco (New York, USA).
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8

Hormone Receptor Activation Assay

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MCF-7 and T47D were obtained from Prof Yu-Mei Feng [99 (link),100 (link)]. The cells were grown in RPMI-1640 media (Biological Industries, Beit-Haemek, Israel) with 10% FBS (Biological Industries, Beit-Haemek, Israel) and 1% penicillin/streptomycin in a humidified atmosphere (95% air, 5% CO2) at 37 °C. To avoid background estrogenic stimulation, MCF-7 and T47D cells were cultured in hormone stripped medium (Phenol red-free RPMI1640 (#11835-030, Gibco, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% charcoal-stripped fetal bovine serum (#04-201-1A, Biological Industries, Beit-Haemek, Israel) for 56 h, followed by treatment with 10−8 mol/L E2, P4 or MPA for 16 h.
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9

Signaling Pathway Inhibition in Cells

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RPMI-1640, fetal bovine serum, and phosphate buffered saline (PBS) were obtained from Lonza (Basel, Switzerland). Phenol red-free RPMI-1640, antibiotics, and Trypsin-EDTA were from Gibco BRL. The specific EGFR inhibitor BIBX1382 was from Calbiochem (La Jolla, CA). Goat antihuman p-PI3K antibody (p85a, Tyr508) was from Santa Cruz Biotechnology (Santa Cruz, CA). Rabbit antihuman EGFR antibody, mouse antihuman p-EGFR antibody (Tyr1068), ERK2 antibody, p-MAPK antibody (p44/p42, Thr202/Tyr204), rabbit antihuman PI3K antibody and horseradish peroxidase (HRP)-conjugated secondary anti-rabbit, anti-mouse, and anti-goat IgG antibodies were from Cell Signaling Technology (Danvers, MA). Rabbit antihuman GLUT1 antibody was from Dako. All other reagents were obtained from Sigma Chemicals (St. Louis, MO). The specific PI3K inhibitors wortmannin and LY294002, the specific MAPK inhibitor PD98059, the selective EGFR kinase inhibitor BIBX 1382 and gefitinib, and the protein synthesis inhibitor cycloheximide were prepared as stocks in dimethyl sulfoxide (DMSO). Doses used were 100 nM for cycloheximide, 5 μM for BIBX1382, 5 μM for gefitinib, 200 nM for wortmannin, 10 μM for LY294002, and 50 μM for PD98059. Ethanol and DMSO vehicles were used as controls as indicated.
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10

Estrogen Receptor Activation and Signaling

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RPMI 1640, fetal bovine serum (FBS), penicillin/streptomycin and trypsin were purchased from Gibco (Carlsbad, CA, USA). Recombinant visfatin was obtained from Peprotech (London, UK). Epidermal growth factor (EGF), 17-β estradiol (E2), FK866, LY294002, and U0126 were purchased from Sigma-Aldrich (St. Louis, MO, USA). Phenol red-free RPMI 1640, Opti-MEM I reduced serum medium and lipofectamine 2000 transfection reagent were purchased from Invitrogen Corporation (Carlsbad, CA, USA). Horseradish peroxidase-conjugated goat anti-rabbit IgG and polyclonal antibodies against human ERα, pERα (Ser118) and pERα (Ser167) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Cignal ERE reporter assay kit and dual-luciferase reporter assay kit were purchased from Qiagen (Hilden, Germany) and Promega (Madison, WI, USA), respectively.
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