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Dnase 1 enzyme

Manufactured by Roche
Sourced in France, United States

DNase I is an enzyme that catalyzes the hydrolytic cleavage of DNA, breaking down DNA molecules into smaller fragments. It is commonly used in molecular biology and biotechnology laboratories for a variety of applications, such as the removal of DNA contamination from RNA samples or the preparation of DNA fragments for subsequent analysis or manipulation.

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5 protocols using dnase 1 enzyme

1

Quantifying Gene Expression via RT-PCR

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Total RNA was extracted from plant tissues using TRIzol and the concentration was measured at 260 nm using a Nanodrop 2000 spectrophotometer (Nanodrop Technologies, Wilmington, DE). Equal amounts of total RNA were treated with DNase I enzyme (Roche, Basel, Switzerland) and converted into first-strand cDNA using SuperScript III (Invitrogen, Carlsbad, CA). The cDNA was then used to check target gene expression by real-time RT-PCR with gene-specific primers. Primer sequences are listed in Supplementary Data 1.
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2

Sperm DNA Fragmentation Measurement

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PBS-washed sperm cells were fixed with 4% paraformaldehyde and stored at 4 °C until treatment for the DNA fragmentation measurement. Sperm DNA fragmentation was measured using the TUNEL detection assay (Cell Death Detection Kit POD®, Roche, France) as reported previously [29 (link)]. Briefly, aliquots of fixed sperm cells were washed in PBS, followed by permeabilization in 100 µL of a solution containing 0.1% Triton X-100 in 0.1% sodium citrate for 2 min on ice. Labeling was performed after washing with PBS containing 1% BSA (1000 g, 5 min). Counterstaining with propidium iodide (PI) allowed evaluation of sperm permeabilization. Negative controls were obtained by incubating sperm cells without enzyme (terminal deosynucleotidyl transferase [TdT]). Positive controls were performed by incubating sperm cells with Dnase I enzyme (3 UI, Roche, France). Analysis was performed on a minimum of 20,000 cells using a BD FACS Aria SORP cytometer (BD Biosciences, Franklin Lakes, NJ, USA).
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3

Total RNA Extraction and RT-PCR Analysis

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Total RNA was extracted from plant tissues using TRIzol and the concentration was measured at 260 nm using a Nanodrop 2000 spectrophotometer (Nanodrop Technologies, Wilmington, DE). Equal amounts of total RNA were treated with DNase I enzyme (Roche, Basel, Switzerland) and converted into first-strand cDNA using SuperScript III (Invitrogen, Carlsbad, CA). The cDNA was then used to check target gene expression by real-time RT-PCR with gene-specific primers. Primer sequences are listed in Supplementary Data 1.
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4

Quantifying Antioxidant Gene Expression

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Total RNA was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). Genomic DNA was degraded using DNase I enzyme (Roche, Indianapolis, IN, USA). Total RNA purity was confirmed by absorbance at 260/280 and integrity by 1% agarose gel electrophoresis. Complementary DNA was reverse transcribed from genomic DNA-free RNA (2 μg) using the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA) and oligio-dT. Quantitative PCR reactions were performed in duplicate using an equivalent to 100 ng of RNA and specific primers for Keap1, GSK3β, Nrf2, NF-κB, IκBα, Bach1, GCLM, GCLC, Hmox1, and Nox4 (Table 2). Gene expression was normalized using B2M expression and values were analyzed using the comparative double delta-CT method.
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5

Quantifying Cellular Stress Responses

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Total RNA was obtained using TRIzol reagent (Invitrogen, Carlsbad, CA). Genomic DNA was degraded on the samples using DNase I enzyme (Roche, Indianapolis, IN). Complementary DNA was reverse transcribed from gDNA-free RNA using the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA) using oligio-dT. Real-time PCR reactions were performed in duplicates, using an equivalent to 100 ng of RNA per reaction, using specific primers for Keap1, GSK3β, Nrf2, Bach1, c-Myc, G6PD, PGD, GCLM, GCLC, and normalized with B2M expression. Primer sequences used for qPCR analyses are shown in Table 1.
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