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6 protocols using ultraglutamine

1

Generation of Stable Cell Lines for Protein Expression

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HeLa and RPE1 FlpIn cells were respectively grown in DMEM and DMEM/F12 supplemented with 8% FBS (Lonza), penicillin/streptomycin (50 μg ml−1), Ultra-glutamine (Sigma; 2 mM), blasticidin (4 μg ml−1) and hygromycin for HeLa (200 μg ml−1) or puromycin for RPE1 (1.6 μg ml−1). 293Ts were grown in DMEM supplemented with 8% FBS (Lonza), penicillin/streptomycin (50 μg ml−1) and Ultra-glutamine (Sigma; 2 mM). Plasmids were transfected using Fugene HD (Roche) for HeLa or Lypofectamin LTX (Invitrogen) for RPE1 according to the manufacturer's instructions. To generate stably integrated HeLa and RPE1 FlpIn cell lines, pCDNA5-constructs were co-transfected with pOG44 recombinase in a 1:9 for HeLa and 1:5 ratio for RPE1 (ref. 55 (link)). Constructs were expressed by addition of 1 μg ml−1 doxycycline for 24 h siHEC1 (custom; Thermo Fisher Scientific; 5′-CCCUGGGUCGUGUCAGGAA-3′) and siGAPDH (Thermo Fisher Scientific; D-001830-01-50) were transfected using HiPerfect (Qiagen) according to manufacturer's instructions.
Cells expressing RFP-MAD2 were obtained through lentiviral transduction and subsequent selection with puromycin (1.6 μg ml−1).
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2

Isolation and Culture of Skeletal Muscle Stem Cells

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Skeletal muscle stem cells were obtained from a 19-year-old patient undergoing a surgical
procedure for cruciate ligament reconstruction in Poznan Voivodship Hospital. Cells were
cultured in standard Modified Eagle’s Medium with 4.5 g/l glucose, supplemented with 20%
fetal bovine serum (Lonza, Bazylea, Switzerland), 1% antibiotics, 1% ultra-glutamine and
bFGF (Sigma-Aldrich, St. Louis, MO, USA) as previously described28 . The cells were maintained in vitro under standard cell culture conditions (95%
humidity, 5% CO2 at 37°C).
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3

Daunorubicin-Resistant Gastric Cancer Cells

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The studies focused on elucidating human gastric cancer cells: daunorubicin—sensitive EPG85-257P and daunorubicin resistant EPG85-257 RDB, obtained as a kind gift from Prof. Herman Lage. EPG85-257 RDB cell line indicates resistance to daunorubicin and overexpression of MDR1 (known as P-gp) mechanism involvement [1 (link)]. Gastric cell lines were grown in Leibovitz L-15 medium (Sigma-Aldrich, Poznan, Poland) supplemented by 10% fetal bovine serum (FBS, Lonza, Celllab, Warsaw, Poland), 1% of antibiotics (penicillin/streptomycin, Sigma-Aldrich, Poland), 1 mM ultraglutamine (Sigma-Aldrich, Poznan, Poland), 6.25 mg/L fetuin (Sigma-Aldrich, Poland), 2.5 mg/mL transferrin (Sigma-Aldrich, Poznan, Poland), 0.5 g/L glucose, 1.1 g/L NaHCO3, 1% minimal essential vitamins (Mem-Vit, Sigma-Aldrich, Poznan, Poland). The cells were maintained in a humidified atmosphere at 37 °C and 5% CO2 (SteriCult, Thermo Scientific, Alab, Warsaw, Poland). For the experiments, the cells were removed by Trypsin-EDTA 0.25% solution (Sigma-Aldrich) and washed with PBS (phosphate-buffered saline) (BioShop, Lab Empire Poland, Rzeszow, Poland).
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4

Culturing and Differentiating Human and Mouse Cell Lines

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Human embryonic kidney 293 cells were maintained at subconfluence in Dulbecco's modified Eagle's medium (DMEM) containing 4.5 g/L glucose (Sigma‐Aldrich) supplemented with 10% heat inactivated fetal bovine serum (FBS) (Sigma‐Aldrich), 2 mM Ultraglutamine (Lonza), 10 U/mL penicillin, and 100 U/mL streptomycin (Lonza). Cells were grown at 37°C in a humidified atmosphere with 5% CO2. The myogenic C2C12 mouse cell line was maintained at subconfluence in DMEM containing 4.5 g/L glucose (Sigma‐Aldrich) supplemented with 20% heat inactivated FBS, 2 mM Ultraglutamine, 10 U/mL penicillin, and 100 U/mL streptomycin and grown at 37°C in a humidified atmosphere with 5% CO2. C2C12 cells were differentiated at 95% confluence by reducing serum levels to 2% horse serum (Thermo Fisher Scientific).
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5

Gastric Adenocarcinoma Cell Lines Protocol

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Two gastric adenocarcinoma cell lines were used: the EPG85-257 P – sensitive and EPG85-257 RDB – daunorubicin-resistant cell line. Human gastric cancer cells were obtained as a kind gift from Prof. Herman Lage. The EPG85-257 RDB cell line reveals the overexpression of MDR1 and the resistance to daunorubicin [37 (link)]. Both cell lines were cultured in Leibovitz L-15 medium (Sigma-Aldrich, Poznan, Poland) supplemented by 10% fetal bovine serum (FBS, Lonza, Poland), 1% antibiotics (penicillin/streptomycin, Sigma-Aldrich, Poznan, Poland), 1 mM ultraglutamine (Sigma-Aldrich, Poznan, Poland), 6.25 mg/L fetuin (Sigma-Aldrich, Poznan, Poland), 2.5 mg/mL transferrin (Sigma-Aldrich, Poznan, Poland), 0.5 g/L glucose, 1.1 g/L NaHCO3, and 1% minimal essential vitamins (Mem-Vit, Sigma-Aldrich, Poznan, Poland). Cell cultures were cultured as a monolayer on a 25 and 75 cm2 plastic flask (Sarstedt, Germany) maintained in a humidified atmosphere at 37 °C and 5% CO2, and detached for the experiments by trypsinization (trypsin 0.025% and EDTA 0.02% solution, Sigma-Aldrich, Poznan, Poland). Cells were passed every 2–3 days and a day before the experiment.
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6

Isolation and Culture of Skeletal Myogenic Cells

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SkMCs were obtained from the patient from remaining muscle tissue after a cruciate ligament reconstruction procedure. Skeletal myogenic cells were isolated and enriched using a previously described methodology called “pre-plating” with gelatin coated flasks [16 (link)]. All procedures here employed were approved by the Local Bioethical Committee of Poznan Medical University (permission no. 818/13) and were conducted in accordance with the principles of Good Clinical Practice. Written consents from the patients were obtained. All the methods used in the study with human biological material adhered to the principles outlined in the Declaration of Helsinki. Cells were cultured in standard Dulbecco’s modified Eagle’s medium with 4.5 g/L of glucose, supplemented with 20% bovine fetal serum (Lonza Group, Basel, Switzerland), 1% antibiotics, 1% Ultraglutamine, and bFGF (Sigma-Aldrich, St. Louis, MO, USA). Cells were maintained in vitro in standard cell culture conditions (95% humidity and 5% CO2 at 37 °C). The medium was changed every 48 h, and to avoid spontaneous myotube formation the cells were passaged when they reached 70% confluence using 0.25% trypsin (Lonza Group, Basel, Switzerland). Cells were in vitro cultured until they reached appropriate distortion quantity and confluence, then the polymeric agent was applied for 24 h, either loaded with BCB or without cargo.
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