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Minitab

Manufactured by Roche

Minitab is a statistical software package designed for data analysis and process improvement. It provides a range of tools for data manipulation, visualization, and statistical modeling. Minitab is widely used in various industries, including manufacturing, healthcare, and education, to help organizations make data-driven decisions.

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5 protocols using minitab

1

AZD4547 Inhibitory Concentration Assay

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NF- or JNA cells (3 × 105) were plated in a 60-mm3 culture dish in 10% FBS DMEM for 48 hours. Cells were treated for 24 hours with AZD4547 at inhibitory concentration 50 (IC50; the dose that is cytotoxic to 50% of the cells treated in vitro) in serum-free media (SFM). Cells were lysed using radioimmunoprecipitation assay (RIPA) lysis buffer and a mixture of protease and phosphatase inhibitors (minitab; Roche, Basel, Switzerland). Lysates were sonicated on ice, debris removed by centrifugation, and supernatants stored at −80°C. Sodium dodecyl sulfate–polyacrylamide (SDS-PAGE) gels (12%) were used to separate proteins, and proteins were transferred to nitrocellulose membranes. Membranes were blocked with Odyssey blocking buffer (Li-Cor, Omaha, NE) in a 1:1 mixture with PBS 1% Tween-20 (PBST). Primary antibodies were incubated overnight in 1:1 blocking buffer to PBST. Primary antibodies were detected using DyLight conjugated secondary antibodies. Protein bands were detected using Li-Cor odyssey protein imaging system and quantified using ImageJ software (NIH, Bethesda, MD; http://imagej.nih.gov/ij/).
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2

Western Blot Protein Quantification

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Whole-cell lysates were extracted using RIPA lysis buffer and a mixture of protease and phosphatase inhibitors (Minitab, Roche). Lysates were sonicated on ice, debris removed by centrifugation, and supernatants stored at −80 °C. Sodium dodecyl sulfate-polyacrylamide 12% gels were used to separate proteins, and proteins were transferred to nitrocellulose membranes. Membranes were blocked with Odyssey blocking buffer (Li-Cor) in a 1:1 mixture with PBS 1% Tween-20 (PBST). Primary antibodies were incubated overnight in 1:1 blocking buffer to PBST. Primary antibodies were detected using DyLight conjugated secondary antibodies. Protein bands were detected using Li-Cor odyssey protein imaging system and quantified using ImageJ software (v. 1.50i).
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3

Autophagy Modulation by 131I-FAP-2286 in PANC-1 Cells

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The expression of p62, a classical marker of autophagy, in PANC-1 cells exposed to 131I-FAP-2286, was measured by western blotting. To assess the influence of CAFs on the autophagy of PANC-1 induced by 131I-FAP-2286, the cell co-culture experiment was performed in a 6-well plate with 3 μm pore size transwell inserts, where PANC-1 cells and CAFs were seeded into the bottom wells and the upper inserts, respectively. After a 24-h culture with 131I-FAP-2286, p62 expression in PANC-1 was detected. After receiving the corresponding treatments, the cells were lysed using RIPA lysis buffer in the presence of protease and phosphatase inhibitors (Minitab, Roche). The lysates were sonicated on ice and then centrifuged at 12,000 rpm at 4 °C for 10 min. The supernatants were collected for the protein concentration detection, and then were exposed to 12% SDS–polyacrylamide gel electrophoresis. The separated proteins were transferred to nitrocellulose membranes, followed by being blocked with Odyssey blocking buffer (LI-COR) in PBS containing 1% Tween-20. Primary antibodies of p62 and β-actin were incubated in blocking buffer at 4 °C overnight, and then were detected using HRP-conjugated secondary antibody. The photos of the target protein bands were captured using LI-COR Odyssey protein imaging system and quantified by Image J software.
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4

Permeabilized Skeletal Muscle Preparation

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Animal procedures were performed according to the Guide for the Use and Care of Laboratory Animals published by the National Institutes of Health and approved by the institutional animal care and use committee at the University of Vermont and the University of Cincinnati. Homozygous C2−/− (FVB strain) mice of either sex and 14−16 weeks old were deeply anesthetized with 2–4% isoflurane and killed by cervical dislocation. Skeletal muscles including extensor digitalis longus (EDL) were prepared as previously described51 (link). Muscles were removed, and their tendons tied to wooden sticks to prevent contraction and placed in a relaxing solution composed of (mM): EGTA (5), MgCl2 (2.5), Na2H2ATP (2.5), imidazole (10), K-propionate (170), a protease inhibitor (1 Minitab per 10 mL, Roche), pH = 7. Over the next 18 h at 4 °C, 50% of the relaxing solution was gradually replaced with glycerol. Samples were then stored at −20 °C.
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5

Western Blot Analysis of MAPK Signaling

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Whole-cell lysates were extracted using RIPA lysis buffer and a mixture of protease and phosphatase inhibitors (Minitab, Roche, Basel, Switzerland). Lysates were sonicated on ice, debris removed by centrifugation, and supernatants stored at −80 °C. Sodium dodecyl sulfate-polyacrylamide 12% gels were used to separate proteins, and proteins were transferred to nitrocellulose membranes. Membranes were blocked with Odyssey blocking buffer (Li-Cor, Lincoln, NE) in a 1:1 mixture with PBS 1% Tween-20 (PBST). Primary antibodies (phospho-MAPK, and total MAPK, Cell Signaling, Danvers, MA) were incubated overnight in 1:1 blocking buffer to PBST. Primary antibodies were detected using DyLight conjugated secondary antibodies (anti-rabbit IgG DyLight 488 (#35553), and anti-mouse IgG DyLight 800 (#35521) from Thermo Fisher (Waltham, MA)). Protein bands were detected using Li-Cor odyssey protein imaging system.
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