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39 protocols using anti cd4 pe

1

Intracellular IL-17A Detection in PBMCs

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PBMCs were isolated from heparinized whole blood cells (HWB), carefully layered on Ficoll-Paque Plus (GE Healthcare, Uppsala, Sweden) and centrifuged for 30 min. Lymphocyte and monocyte layers were collected and stained using anti-CD3-FITC, anti-CD4-PE and anti-CD8-Pacific Blue antibodies (Biolegend, San Diego CA). Cells were permeabilized using Perm2 (BD Biosciences, San Jose, CA, USA) according to the manufacturer’s recommendations and then stained for detection of intracellular IL-17A with an anti-IL-17A-PercP-Cy5.5 antibody (Biolegend). Samples were analyzed by flow cytometry.
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2

Multicolor Flow Cytometry of Tumors

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Cells were analyzed using LSRII (BD, Pharmingen) and sorted using FACS-ARIA II (BD, Pharmingen). The following antibodies were used: anti-CD45 FITC, anti-CD31 FITC, anti-Ter119 FITC, anti-Sca1 Pacific Blue, anti-PDGFRα PE, anti-CD3 APC, anti-CD8 FITC, anti-CD45 Pacific Blue, anti-CD4 PE, anti-NK1.1 APC-cy7, anti-B220 APC-cy7 (all purchased from Biolegend). Tumors were digested to single cell suspension enzymatically and filtered twice through 70 μm filters. Red blood cells were lysed with ACK solution (Gibco), washed twice with PBS, and then stained with the fluorophore-conjugated antibodies for 15 min at room temperature. The excess of unbound antibodies was washed out before acquisition in flow cytometry.
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3

Sarcoma Tumor Dissociation and Immunophenotyping

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Sarcomas were grown in mice until approximately 1 × 1 × 1 cm in size. Tumors were resected and enzymatically digested. Where applicable, tumor cells were FACS-sorted based on the expression of the fluorescent marker dsRED.
Human sarcoma samples were minced and then enzymatically and mechanically digested using the 37C_h_TDK_2 protocol on the Miltenyi gentleMACS with Tumor Dissociation Kit for Human cells (Miltenyi Biotec, Auburn, CA). Cell suspensions were washed in DPBS with 0.04% BSA and filtered through 70 μm strainers (Bioland Scientific LLC, Paramount, CA). Red blood cells were lysed with ACK buffer prior to staining with the following surface antibodies: anti-CD45 Pacific Blue, anti-CD11b APC, anti-CD163 PE, anti-CD3 FITC, anti-CD4 PE, anti-CD8 APC, anti-CD56 APC Cy7, anti-CD19 FITC (all purchased from Biolegend).
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4

Single-Cell Analysis of T-Cell Cytokines

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LSG biopsies were obtained and washed 5X in RPMI complete medium. Single lymphocyte isolation of LSG biopsies were isolated in RPMI medium supplemented with 1 mg/mL collagenase and 1 mg/mL DNase as previously described [14 (link)]. Lymphocytes were cultured in RPMI with 3 Units/μL IL-2, anti-CD3/CD28 beads (Thermo Scientific), 500 ng/mL Ionomycin sulfate and 50 ng/mL PMA (Sigma-Aldrich) for 4 h at 37 °C. Cells were then stained using anti-CD8-APC, anti-CD3-FTIC, anti-CD4-PE (Biolegend), and Calcein violet 405 nm Live/Dead (Life Technologies). Following surface staining, cells were suspended in 300 μL complete medium were deposited onto the arrays of nanowells and imaged as previously described [22 (link)]. The nanowells were hybridized with the capture slide coated with anti-IL-17A (eBioscience) and anti-IFN-γ (MABTECH). After 2 h, the capture slide was coated with anti-IL-17A-Dylight 488 and anti-IFN-γ-Dylight 594. The slide was imaged using the Genepix 4400A scanner (Molecular Devices). Single-cell data analysis was performed as described previously [22 (link),24 ].
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5

Phenotyping Lymphocyte Subsets in Mice

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Lymphocytes were purified from the spleen or lymph nodes of WT and Rgs1 KD mice and labelled with the following antibodies: anti-PD1 PE-Cy7, anti-CXCR5 APC, anti-CD4 PE, anti-IgD PE, anti-ICOS PE or anti-CD19 PB (BioLegend). Foxp3 intracellular staining kit (eBioscience) was used to label follicular regulatory T cells. Fixation/Permeabilization buffers were used to stain intracellular Bcl6 and Ki-67. Intrinsic GFP and Raspberry fluorophores were also analyzed in specific experiments. Data were acquired on an LSRII flow cytometer (BD Biosciences) and analyzed using the FlowJo software (TreeStar Inc.).
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6

Lymphocyte Differentiation Assay

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For lymphocytes differentiation, blood samples were harvested at indicated time points and monocytes were separated though isodensity centrifugation. Thereafter, approximately 106 cells were re suspended in 100 μL of PBS and incubated with 2 μg anti-CD3c FITC together with anti-CD4 PE or anti-CD8 PE antibodies (all from BioLegend, San Diego, CA, USA) for 20 min on ice. Thereafter, the cells were washed twice with PBS and flow cytometry was performed using a FACSort instrument (BD Biosciences, San Jose, CA, USA). Data was analyzed using FlowJo software (Tree Star, San Caros, CA, USA).
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7

Flow Cytometry Analysis of Immune Cells

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After the cells had been prepared, between 500,000 and 1.25 million cells from these single-cell suspensions were incubated with 1 μg of the appropriate primary antibodies (listed below) for 45 minutes on ice, with vortexing at every 7–10 minute intervals. These cells were washed twice with phosphate buffer followed by incubation for 15 minutes with an appropriate second step reagent-conjugated to a fluorochrome. After 15 minutes the cells were washed twice with PBS, and re-suspended in 1XPBS and fixed with paraformaldehyde at 1% final concentration. 10,000 and 25,000 cells were analyzed with a Becton Dickinson FACS Calibur (BD Biosciences, San Jose, CA, USA). Primary antibodies used in this investigation were: Anti-CD3-FITC, anti-CD3-PE anti-CD4-FITC, anti-CD4-PE, anti-CD44 Biotin, anti-B220-FITC and anti-IgM-PE (BioLegend Inc., San Diego, CA, USA). Also anti-CD25-PE, anti-CD5-PE, anti-IgM-PE, anti-IgA-FITC, and anti-B220-PerCP (BD Biosciences, San Jose, CA, USA). Secondary antibodies used were: Streptavidin-PErCP (BioLegend Inc, San Diego, CA, USA) and Streptavidin-PE (BD Biosciences, San Jose, CA, USA).
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8

Comprehensive Immunophenotyping Panel

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The following antibodies were purchased from Biolegend Inc. (San Diego, CA, USA): anti-CD3-pacific blue (17A2), anti-CD4-pacific blue (GK1.5), anti-NK1.1-pacific blue (PK136), anti-CD11b-pacific blue (M1/70), anti-CD11C-pacific blue (N418), anti-Ter-119-pacific blue (Ter-119), anti-CD8-pacific blue (53-6.7), anti-B220-pacific blue (RA3-61B2), anti-CD4-PE (GK1.5), anti-CD4-FITC (GK1.5), anti-CD8-APC (53-6.7), anti-CD8-Pecy7 (53-6.7), anti-CD23-PECy7 (B3B4), anti-CD21/CD35 (CR2/CR)-PerCP/Cy5.5 (7E9), anti-Gr1-Pecy7 (RB6-8C5), Anti-IAb-FITC (KH74), anti-B220-APC-Cy7 (RA3-61B2), anti-CD117-PE-Cy7 (2B8), anti-PDCA1-APC (927), anti-CD135 (flt3)-APC (A2F10), anti-CD25-PE (3C7), anti-CD11C (N418), anti-IgD-PerCP/Cy5.5 (11-26c.2a), anti-Sca1-APC (D7), anti-IgM-PE (RMM-1), anti-CD16/32-APC/Cy7(93), anti-CD127 (IL-7R)-PerCP/Cy5.5 (SB/199), anti-CD93 (AA4.1)-PE (AA4.1), anti-CD117 (c-kit)-PE/Cy7 (2B8), and anti-CD34-PE (MEC14.7). Anti-human/mouse phospho-ERK1/2 (T202/Y204)-APC (MILAN8R), anti-human-mouse phospho-p38 (T180/Y182)-APC (4NIT4KK), and anti-human/mouse phosphor-AKT (S473)-APC (SDRNR) were purchased from eBioscience (San Diego, CA, USA).
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9

Isolation and Characterization of Murine Tumor Cells

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Single cell suspensions from murine primary pancreatic tumors and pulmonary metastasis were prepared by mechanical and enzymatic disruption and tumor cells, tumor associated macrophages and stromal cells were analyzed and sorted using flow cytometry (FACS ARIA II, BD Bioscience). Samples were digested as outlined above, the cells were then filtered through a 70 μm cell strainer and resuspended in PBS + 1% BSA, blocked for 10 min on ice with FC Block (BD Pharmingen, Clone 2.4G2) and stained with Sytox® blue viability marker (Life Technologies) and conjugated antibodies anti-CD45-PE/Cy7 (Biolegend, clone 30-F11) and anti-F4/80-APC (Biolegend, clone BM8).
Blood was collected from mice via tail vein bleed in EDTA-tubes. Red blood cell lysis was performed and resulting leukocytes were resuspended in PBS + 1% BSA and blocked for 10 min on ice with FC Block and stained with Sytox® blue viability marker and conjugated antibodies anti-CD45-APC/Cy7 (Biolegend, 103115), anti-CD11b-APC (Biolegend, 101212), anti-Ly6G-PerCP-Cy5.5 (Biolegend, 127616), anti-Ly6C-PE (Biolegend, 128008), anti-CD3-PE-Cy7 (Biolegend, 100320), anti-CD4-PE (Biolegend, 100408), and anti-CD8-PerCP-Cy5.5 (Biolegend, 100734). Cell analysis was performed using FACS Canto II.
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10

Comprehensive Immune Cell Profiling

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All antibody staining was preceded by 15 min of 1:50 FcγR block in FC buffer, on ice. Extracellular antibodies were then added to FC buffer containing FcγR block, and incubated for 45 min on ice. Intracellular staining was accomplished after surface staining using the Foxp3 staining kit (eBioscience). Myeloid subsets were stained with anti-CD1lb-FITC, anti-Ly6C-AF700, anti-MR-PE-Cy7, anti-CD11c-PE/Dazzle594, anti-Ly6G-BV605 (BioLegend), anti-MHCII-eFluor450 (eBioscience), and anti-F4/80-APC (BioRad). To evaluate Tregs, cells were stained with anti-CD3-AF488, anti-CD4-APC, anti-CD25-PerCP-Cy5.5 (BioLegend), and anti-Foxp3-PE (BD Pharmingen). To assess T cell activation, total tumor cells were incubated for 4 hr at 37°C in a 5% CO2 incubator with Protein Transport Inhibitor Cocktail containing brefeldin A and monensin, or with Cell Stimulation Cocktail containing protein transport inhibitors and PMA/ionomycin (eBioscience). Cells were then stained with anti-CD3-AF488, anti-CD4-PE, and anti-CD8-PerCP-Cy5.5 followed by intracellular stain with anti-IFNγ-APC (BioLegend). In addition, 1E5 CD3+ cells were stimulated with 4E4 CD3/CD28 Dynabeads (ThermoFisher) for 3 days, followed by staining using anti-CD3-PerCP-Cy5.5, anti-CD8-BV650, anti-CD4-BV605, anti-IFNγ-APC, anti-TNFα-BV421 (BioLegend), and anti-GranzymeB-PE (eBioscience).
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