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8 protocols using mettl14

1

Western Blot Analysis of Protein Expression

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We lysed total protein from treated cells using RIPA buffer (Cell Signaling Technology) supplemented with Protease Inhibitor Cocktail (Thermo Fisher; 78430). Western blotting was performed as previously described41 (link), and the primary antibodies included GAPDH (Santa Cruz, sc-137179), LKB1 (Santa Cruz, sc-32245), ALKBH5 (Proteintech, 16837-1-AP), CTCF (Santa Cruz, sc-271474), METTL3 (Abcam, ab195352), METTL14 (Abcam, ab220030), FTO (Abcam, ab126605), WTAP (Proteintech, 60188-1-Ig), SOX2 (Cell signaling, #3579), SMAD7 (Santa Cruz, sc-11392), and MYC (Cell signaling, #13987). We performed densitometric analyses of band intensity using ImageQuant TL 8.2 image analysis software (GE Healthcare Life Sciences, USA) and GAPDH was as an internal control.
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2

Western Blot Analysis of Cellular Proteins

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Total protein or nuclear/cytoplasmic protein fractions were extracted from cells using lysis buffer (Beyotime Biotechnology Shanghai, China) supplemented with protease inhibitor. Western blot was performed with a standard method as previously described (Chen et al., 2018b) using the following antibodies: RDM1 (1 : 500; Proteintech, Rosemont, IL, USA), p53 (1 : 2000; Santa Cruz Biotechnology, Dallas, TX, USA, β‐actin (1 : 2000; Santa Cruz), 14‐3‐3σ (1 : 1000; Santa Cruz), p21 (1 : 2000; CST, Boston, MA, USA), Cyclin A1 (1 : 1000; Santa Cruz), Cyclin B1 (1 : 1000; CST), VEGFB (1 : 1000; CST), BAX (1 : 1000; CST), RAD51 (1 : 1000; CST), hTERT (1 : 500; Abcam, UK), c‐myc (1 : 1000; Proteintech), METTL3 (1 : 1000; Abcam), METTL14 (1 : 1000; Abcam), Ras (1 : 500; CST), p‐cRaf (1 : 500; CST), ERK (1 : 1000; CST), and p‐ERK (1 : 1000; CST).
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3

RNA Immunoprecipitation of METTL3 and METTL14

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A Magna RIPTM RNA-Binding Protein Immunoprecipitation Kit from Millipore was used for RNA immunoprecipitation in accordance with the kit instructions. Briefly, after 48 h transfection, Fadu cells were harvested and lysed with RIP lysis buffer on ice for 10 min. After centrifugation, the supernatant was incubated with 30 μl Protein-A/G magnetic beads (Roche, USA) and antibody (METTL3, 10 μg, Abcam; METTL14, 10 μg, Abcam) at 4 °C overnight. The complex was then centrifuged and then washed 3 times with washing buffer. Immunoprecipitated RNA was used in qRT-PCR analysis.
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4

Comprehensive Western Blot Analysis of Key Molecular Markers

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Western Blot was performed as our previously described [20 (link)]. The primary antibodies include Mettl14 (220030, Abcam, USA), FTO (27226-1-AP, Proteintech, China), α-syn (10842-1-AP, Proteintech, China), TH antibody (25859-1-AP, Proteintech, China), ATM antibody (27156-1-AP, Proteintech, China), YTHDF3 antibody (25537-1-AP, Proteintech, China), CD81 antibody (27855-1-AP, Proteintech, China), Syntenin (ab19903, Abcam, USA), HSP90B1 antibody (14700-1-AP, Proteintech, China), Calnexin antibody (10427-2-AP, Proteintech, China), TSG101 antibody (28283-1-AP, Proteintech, China), and GAPDH antibody (60004-1-AP, Proteintech, China).
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5

Western Blot Analysis of RNA Methylation Regulators

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The total proteins from C2C12 cells were lysed in RIPA lysis buffer supplemented with a protease inhibitor cocktail (4693124001; Roche, Mannheim, Germany). The membranes were blocked with 5% BSA for 1 h at room temperature and subsequently probed with primary antibodies overnight at 4 °C. the following dilutions were used for each antibody: METTL3, METTL14, WTAP, DNMT1, DNMT3A and DNMT3B (all 1:1000; Abcam, Cambridge, England). The membranes were then washed with PBS-Tween and incubated for 50 min with horseradish peroxidase-conjugated secondary antibodies (SA00001–1; Proteintech, Wuhan, China). Protein bands were detected after treatment with the SuperSignal west Femto agent (34094; Thermo Scientific, Waltham, USA).
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6

METTL14 and Ki-67 Expression in BC and TNBC

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BC and TNBC tissue sections were rehydrated in xylene and alcohol, and then rehydrated at 37°C with 3% H2O2 for 30 min. Next, all slices were incubated with goat serum for 15 min, and then washed with TBST three times. Ten minutes each time. Then, the sections were incubated overnight with METTL14 (1: 1000, Abcam) and Ki‐67 (1: 1000, Abcam) at 4°C. Next, the sections were incubated with anti‐rabbit secondary IgG antibody at 37°C for 30 min. DAB (Boster) was used for visual colour rendering of the signal.
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7

Unraveling TNBC Proteome: Native PAGE Analysis

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Total protein was isolated from TNBC samples (tumour tissues, paired normal adjacent tissues and cell lines) using RIPA lysis buffer (Beyotime Institute of Biotechnology). Total protein was separated by 10% SDS‐PAGE (25 μg protein per lane), and the protein was transferred with PVDF membrane (MilliporeSigma). Blocking of PVDF membrane was performed with 5% nonfat milk powder (Beyotime). To detect the expression of PKM2 protein in different conformations, the total protein extracted from the sample was not thermal denatured and was denatured using a non‐denatured gel sample loading buffer (Beyotime). Next, protein electrophoresis was performed using native PAGE running buffer (Beyotime). The PVDF membranes were probed at 4°C overnight with antibodies against METTL14 (1:1000; Abcam), PKM2 (ProteinTech Group, Inc.), DGCR8 (1:1000; Abcam), TRIM9 (1:1000; Abcam) and β‐actin (1:5000; Abcam). Finally, protein expression was analysed by chemiluminescence reagents (Hyperfilm ECL).
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8

Protein Expression Analysis in Treated Cells

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We lysed total protein from treated cells using RIPA buffer (Cell Signaling Technology) supplemented with Protease Inhibitor Cocktail (ThermoFisher; 78430). We loaded 20 µg of protein and separated the sample using 12% SDS-PAGE. Western blotting was performed as previously described [23] , and the primary antibodies included GAPDH (Santa Cruz, sc-137179), LKB1 (Santa Cruz, sc-32245), ALKBH5 (Proteintech, 16837-1-AP), CTCF (Santa Cruz, sc-271474), METTL3 (Abcam, ab195352), METTL14 (Abcam, ab220030), FTO (Abcam, ab126605), WTAP (Proteintech, 60188-1-Ig), SOX2 (Cell signaling, #3579), SMAD7 (Santa Cruz, sc-11392), and MYC (Cell signaling, #13987). We performed densitometric analyses of band intensity using ImageQuant TL 8.2 image analysis software (GE Healthcare Life Sciences, USA) and GAPDH was as an internal control.
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