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6 protocols using anti cd49b dx5

1

Flow Cytometry Analysis of Immune Cells

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For FP infections, feet (cut at the ankles) were minced into small pieces (∼3 mm) and incubated on a rotatory shaker at 37°C for 1 h in a 0.5% (wt/vol) solution of type I collagenase (Worthington). The suspension of cells, LN, or PECs were passed through a 40-μm cell strainer (Fisher Scientific). Red blood cells were lysed with ACK (i.e., ammonium chloride-potassium) lysis buffer. Cells were stained for flow cytometry analysis with the following fluorochrome-conjugated antibodies for cellular subsets: anti-Ly6G (1A8), anti-Ly6C (HK1.4), anti-F4/80 (BM8), and anti-CD11c (N418) (all from BioLegend), anti-CD49b (DX5) from eBioscience, and anti-CD11b (M1/70) from BD Pharmingen. Data were acquired on BD LSR II flow cytometer (BD Biosciences) and analyzed using FlowJo software, version 10.1.
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2

Comprehensive Flow Cytometry Immunophenotyping

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The following antibodies were used in flow cytometry with the indicated antibody clones and manufacturers for the mouse experiments: Anti-CD3 (17A2; BD Biosciences), anti-CD19 (6D5; BioLegend), anti-CD11c (clone: N418; Biolegend), anti-CD11b (M1/70; BioLegend), anti-CD49b (DX5; eBioscience), anti-CD25 (PC61; BD Biosciences), anti-CD90.2 (anti-Thy-1.2; 53 2.1; eBioscience), anti-CD11c (N418; eBioscience), anti-ST2 (DIH9; BioLegend), anti-Siglec-F (clone: E50-2440; Biolegend) anti-CD4 (RM4-5; BD Biosciences), anti-IL-13 (ebio13A, eBioscience), anti-Foxp3 (FJK-16S; eBioscience), anti-CD62L(MEL-14; eBioscience), LGR6 (17658-1-AP; Proteintech). Flow cytometric data acquisition was performed on an LSRFortessa flow cytometer (BD Biosciences), and the data analyzed using FlowJo software version 10.3 (Tree Star). The gating strategy is provided in SI Appendix, Fig. S7 for populations analyzed.
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3

Isolation and Flow Cytometry of BALB/c Mouse Splenocytes

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DCs from spleens of BALB/c mice were prepared using the GentleMACS dissociator (Miltenyi Biotech) according to the manufacturer's protocol. Briefly, spleens were dissociated in GentleMACS C tubes in medium containing collagenase and DNase, incubated for 15 min at 37 C before adding EDTA at a final concentration of 10 mM. Erythrocytes were lysed by incubation with ACT buffer for 5 min on ice. Finally, cells were filtered through a 75 mm Nylon cell strainer. The following Abs were used for subsequent flow cytometry analysis: anti-CD3e (145-2C11; Tonbo Bio- sciences), anti-CD19 (1D3; Tonbo Biosciences), anti-CD49b (DX5; eBioscience), anti-Ly6G (1A8), anti-CD45R (RA3-6B2; Tonbo Biosciences), anti-MHC-II (M5/114.15.2; BioLegend), anti-CD11c (N418; Tonbo Bio- sciences), anti-CD11b (M1/70; Tonbo Biosciences), and anti-CD24 (M1/69; BioLegend).
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4

Mouse Splenic T Cell Purification

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Spleens were dissected from mouse spleen using 70µm cell strainers (Falcon) and further processed under sterile conditions. Single-cell suspensions were rinsed-out with RPMI-1640 (Lonza) supplemented with 10% (vol/vol) fetal calf serum (FCS), 2 mM L-glutamine, 1 mM sodium pyruvate, 0.1 mM non-essential amino acids, 40 mM β-mercaptoethanol, 100 U ml−1of penicillin, and 100 U ml−1of streptomycin (all reagents from Lonza).
CD4+ cells were purified by negative selection with magnetic depletion of B cells, macrophages, DCs, NK cells, granulocytes and CD8+ cells using a cocktail of biotinylated antibodies (anti-CD49b, DX5, eBiosciences; anti-GR1, RB6-8C5, produced in house; anti-Ter119, BioXCell; anti-CD11c, N418, produced in house; anti-CD19, BioXCell; anti-CD8β, H35, produced in house; anti-CD25, PC61.5, eBiosciences (used for Tconv-but not Treg- purification); anti-MHCII, M5/114.15.2, eBiosciences). Cells were recuperated after flow-through the magnetic column, with previous incubation with anti-biotin Microbeads (Miltenyi Biotec). Untouched cells were stained to exclude dead cells and incubated with Fc receptor-blocking antibodies CD16/32 (Fc block; BD Pharmingen) and surface staining antibody CD3+ and CD4+. Tconvs and Tregs were identified in FSC/SSC-low-to-moderate and sorted as GFP- or GFP+ respectively using a BD FACSAria III.
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5

Multiparameter Flow Cytometry Panel

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The following antibodies were used in flow cytometry:
Anti-CD3 (17A2; BD Biosciences), anti-CD19 (6D5 BioLegend), anti-CD11b Pacific Blue (M1/70; BioLegend), anti-CD49b(DX5; eBioscience), anti-CD25 APC (PC61; BD Biosciences) ; anti-CD90.2 (anti-Thy-1.2; 53-2.1; eBioscience); CD11c (N418; eBioscience); and anti-ST2(Biolegend), Anti-CD4 (RM4-5, BD Biosciences), Foxp3(FJK-16S, eBioscience,), anti-CD62L(MEL-14, eBioscience), anti-IL-13(ebio13A, eBioscience), and anti IL-5 (TRFK5, BioLegend).
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6

Flow Cytometric Analysis of Activated Immune Cells

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Cell surface staining was performed using the following antibodies: anti-CD11b (M1/70, Miltenyi Biotec), anti-CD11c (N418, BioLegend) anti-CD3 (17A2, eBioscience), anti-CD49b (DX5, eBioscience), anti-CD69 (H1.2 F3, eBioscience), anti-CD86 (GL-1, BioLegend), anti-MHC-II (M5/114.15.2, Miltenyi Biotec), anti-NK1.1 (PK136, BD Bioscience). Dead cells were excluded from analysis (positive for fixable viability dye, eBioscience). For detection of activated T cells splenocytes were stained with anti-CD4 (GK1.5, eBioscience), anti-CD8 (53–6.7, eBioscience), anti-CD43 (1B11, BioLegend) and anti-CD62L (MEL-14, eBioscience). Intracellular IFN-γ (XMG1.2, Miltenyi Biotec), IL-2 (JES6-5H4, Miltenyi Biotec) and TNF-α (MP6-XT22, BioLegend) staining was performed as described [28 (link),29 (link)]. Data were acquired on LSR II flow cytometer (BD Bioscience) and analyses were performed using FACSDiva (BD Bioscience) and Flow Jo (Tree Star, USA) software.
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