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Topsin 2

Manufactured by Bruker

Topsin 2.1.6 is a software package developed by Bruker for the acquisition, processing, and analysis of nuclear magnetic resonance (NMR) data. The software provides a comprehensive suite of tools for managing and interpreting NMR experiments, including data acquisition, spectral processing, and data analysis.

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5 protocols using topsin 2

1

One-dimensional 1H NMR Analysis of CPS

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The purified CPS from the supernatant was analyzed by one-dimensional 1H nuclear magnetic resonance (NMR) [50 (link)]. NMR experiments were performed on a Bruker Advance II 600 MHz spectrometer (Bruker Bio Spin, Billerica, MA) with Topsin 2.1.6 software (Bruker). Samples were dissolved in 0.5 mL D2O (99.996%, Sigma Chemical Company) and freeze-dried repeatedly to remove the exchangeable protons. The samples were re-dissolved in 0.4 mL D2O and transferred to NMR microtubes [outside diameter, 5 mm, Norell (Norell, Landisville, NJ)]. As previously described [36 (link)], the conditions for one-dimensional 1H NMR spectra were as follows: wobble sweep width of 12.3 kHz, acquisition time of 2.66 s, and relaxation delay of 8.00 s; temperature was 298 K. NMR heparosan standard spectral data was used to confirm peak assignments and assess product purity.
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2

Structural Characterization of Heparin by NMR

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Heparin products were analyzed by 1H-nuclear magnetic resonance (NMR) and two- dimensional NMR spectroscopy heteronuclear single quantum coherence (HSQC) to fully characterize its structure (Fu et al., 2013 (link)). All NMR experiments were performed on a Bruker Advance II 600 MHz spectrometer (Bruker BioSpin, Billerica, MA) with Topsin 2.1.6 software (Bruker). Briefly, samples were each dissolved in 0.5 mL D2O (99.996%, Sigma) and freeze-dried repeatedly to remove the exchangeable protons. The samples were re-dissolved in 0.4 mL D2O and transferred to NMR micro tubes (OD 5 mm, Norell,tubes). The conditions for one-dimensional 1H-NMR spectra were as follows: wobble sweep width of 12.3 kHz, acquisition time of 2.66 S, and relaxation delay of 8 S at 298 K. The conditions for two-dimensional HSQC spectrum were as follows: 32 scans, sweep width of 6.15 kHz, acquisition time of 0.33 S, and relaxation delay of 0.90 S.
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3

Lignin Characterization by NMR Spectroscopy

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The solution-state NMR experiments were all performed on Bruker Advance II 800 MHz spectrometer equipped with a cryogenically cooled probe (TCI) with z-axis gradients (Bruker BioSpin, Billerica, MA). NMR data were processed and analyzed with Topsin 2.1.6 software (Bruker). The lignin was dissolved in DMSO-d6 and transferred into 5-mm NMR microtubes for one-dimensional 1H-NMR, one-dimensional 13C-NMR and two-dimensional 13C-1H heteronuclear single quantum coherence spectroscopy (HSQC) [20 ]. The conditions for one-dimensional 1H-NMR spectra were as follows: 32 scans, acquisition time of 0.99 s, and relaxation delay of 8.00 s. The conditions for one-dimensional 13C-NMR spectra were as follows: 4096 scans, acquisition time of 0.23 s and relaxation delay of 8 s. The conditions for two-dimensional HSQC spectra were as follows: 32 scans, acquisition time of 0.33 s and relaxation delay of 0.90 s. All experiments were carried out at 333K.
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NMR Spectroscopy of LMWH Samples

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LMWH samples were analyzed by 1H, 13C nuclear magnetic resonance (NMR), and two-dimensional NMR spectroscopy. Heteronuclear single-quantum coherence (HSQC), proton–proton correlation spectroscopy (HHCOSY) and total correlation spectroscopy (TOCSY) were used to characterize theirstructures.2 ,17 (link) All NMR experiments were performed on Bruker Advance II 600 MHz spectrometer (Bruker Bio Spin, Billerica, MA) with Topsin 2.1.6 software (Bruker). Samples were each dissolved in 0.5 mL 2H2O (99.996 %, Sigma Chemical Company) and freeze-dried repeatedly to remove the exchangeable protons. The samples were redissolved in 0.4 mL 2H2O and transferred to NMR microtubes (outside diameter, 5 mm, Norell (Norell, Landisville, NJ)). The conditions for one-dimensional 1H-NMR spectra were as follows: wobble sweep width of 12.3 kHz, acquisition time of 2.66 s, and relaxation delay of 8.00 s. Temperature was 298 K. The conditions for two-dimensional HSQC spectra were as follows: 32 scans, sweep width of 6.15 kHz, acquisition time of 0.33 s, and relaxation delay of 0.90 s. The conditions for two-dimensional HHCOSY spectra were as follows: 16 scans, sweep width of 7.46 kHz, acquisition time of 0.28 s, and relaxation delay of 1.50 s.16 (link)
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5

Nuclear Magnetic Resonance Analysis of Heparosan and Heparin

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Heparosan and heparin products were analyzed by 1H nuclear magnetic resonance NMR). All NMR experiments were performed on a Bruker Advance II 600 MHz spectrometer (Bruker BioSpin, Billerica, MA) with Topsin 2.1.6 software (Bruker) as previously reported.40 (link),41 (link) Briefly, samples were each dissolved in 0.5 mL D2O (99.96%, Sigma) and freeze-dried twice to remove the exchangeable protons. The samples were re-dissolved in 0.4 mL D2O and transferred to NMR micro tubes (OD 5 mm, Norell, tubes). 1H NMR experiments were performed with 64 scans and an acquisition time of 1.5 sec at 298 K.
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