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6 protocols using las af program

1

Confocal Microscopy Imaging of Brain Maps

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Images were acquired on a Leica confocal microscope SP5 (Leica Microsystems). Brain maps were imaged using a 20X immersion objective and a 3.0 optic zoom (2.0 μm step size, 512 × 512 pixel resolutions). Map images are presented as maximum projections of z-stacks. Co-localization was measured on one z using the Leica LAS AF program to obtain Pearson coefficient.
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2

Immunofluorescence Assay for Chlamydia

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The cells were seeded on cover slips and infected with C. trachomatis serovar L2 at MOI 1 for indicated time points. Before fixation with 4% PFA/Sucrose (Roth), the cells were washed with DPBS (Gibco). Fixed cells were permeabilized with 0.2% Triton X-100 (Sigma-Aldrich) in ×1 DPBS for 30 min, blocked with 2% FBS in ×1 DPBS for 45 min and incubated with primary antibodies for 1 hr at room temperature. Primary antibodies, chlamydial HSP60 (Santa Cruz, 1:500) and Phalloidin (Thermo Fisher Scientific), were diluted in 2% FBS in ×1 DPBS. Samples were washed and incubated with fluorescence dye conjugated secondary antibodies (Dianova) for 1 hr in the dark at room temperature. Cover slips were mounted onto microscopy slides using mowiol, slides were air-dried for at least 24 hr and examined using a LEICA DM2500 fluorescence microscope. The images were analysed with LAS AF program (Leica) and ImageJ software.
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3

Confocal Imaging: Acquisition and Analysis

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Fluorescence image acquisition and analyses were performed as previously described 53, 54 . Images were obtained on a Leica SP5 confocal microscope using the LAS-AF program (Leica). Stacks of 16-35 images were acquired using a 63 X objective with an interval of 0.2 µm and an optical zoom
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4

Chromosome Spread Analysis by Fluorescence Microscopy

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Slides with chromosome spreads were analysed using a fluorescence microscope, Leica DM 4000, equipped with a monochrome digital camera DFC350 FX and filter cubes corresponding to fluorochromes Alexa488, Cy3, and DAPI (Leica-Microsystems). The LAS X core computer program was used to obtain and process colour images.
Analysis of the 3D morphology of the gonads and whole-mount FISH was performed by laser scanning confocal microscopy (using a Leica TCS SP5 based on the inverted microscope Leica DMI 6000 CS, Leica-Microsystems). Nuclei were scanned in XYZ planes using lens HC PL APO 40×. Images were obtained by the LAS AF program (Leica-Microsystems, Germany).
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5

Nocodazole Effects on Endosome Dynamics

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Nocodazole was used as a MT depolymerizing drug. Vero cells were seeded and infected at an moi of 1 pfu/cell and treated with 10 µM nocodazole in DMSO 1 hour prior to infection (−1 h), at the time of infection (0 hpi), or 2 and 4 hpi (+2 and +4 hpi). To address the effect of nocodazole in endosome movement in this cell line, we detected acidic endosomes using lysotracker (75 nM), a pH-sensitive dye, for 30 min at 37 °C. Then, confocal images were taken before and after nocodazole treatment and after washing the drug and adding fresh media. Time-lapse microscopy was carried out using a Leica TCS SPE confocal microscope that included a humidified incubation chamber, a CO2 controller and a heating unit. Selected stacks were recorded every 10 s using the Leica Microsystems LAS AF program, and the movies were displayed at 1–5 frames per second. Then, 10 µM nocodazole stopped vesicular traffic, and movement was recovered after washing, as it is a reversible drug (data not shown).
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6

Live-Cell Imaging with Confocal Microscopy

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Confocal microscopy was carried out using a Leica TCS SPE confocal microscope that included a humidified incubation chamber, a CO2 controller and a heating unit. Selected stacks were recorded every 10-s using the Leica Microsystems LAS AF program and the films were displayed at 1–5 frames/s.
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