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10 protocols using actin tracker green 488

1

Chondrocyte Imaging with Copper-based Dyes

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Chondrocytes were seeded in confocal dishes (1 × 105 cells), and then incubated with Cy5.5-Cu1.5MH or Cy5.5-Cu6MH (20 μg/ml) in the dark for 24 h. After incubation, chondrocytes were washed with PBS 3 times and then fixed with paraformaldehyde (4% PFA, Biosharp, China) for 10 min. Later, the cytoskeleton was stained with the actin-tracker green-488 (Beyotime Biotechnology, China) following the protocols, and the nuclei was stained with 4, 6-diamidino-2-phenyindole dilactate (DAPI, Beyotime Biotechnology, China) for 10 min before PBS washing 3 times. Finally, the images were captured with a confocal scanning microscope (Leica, Germany), and the corresponding fluorescence intensity was quantified by ImageJ. Specifically, Cy5.5-Cu1.5MH and Cy5.5-Cu6MH were prepared by the following procedures. In detail, 50 mg of Cu1.5MH or Cu6MH was dispersed in DMSO followed by the addition of 50 mg/ml Cy5.5 N-hydroxysuccinimide ester (Cy5.5 NHS ester, Lumiprobe, USA) overnight. The final product was collected by vacuum drying after methanol washing. Besides, chondrocytes were incubated with Cu6MH (20 μg/ml) for 12 h, and chondrocytes were also embedded in paraffin and cut into slice for observation by TEM.
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2

Cytoskeleton Visualization Protocol

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To
monitor the cell morphology (cytoskeleton), the cells were fixed with
4% paraformaldehyde for 30 min. After washing three times with PBS,
the cells were blocked by 5% BSA for 1 h at 37 °C. Subsequently,
the cells were incubated with Actin-Tracker Green-488 (1:100; Cat#
C2201S, Beyotime, Shanghai, China) at room temperature for 1 h in
a dark environment. The Actin-Tracker Green-488 probe is a phalloidin
labeled by the fluorescent dye Alexandra Fluor 488. The nuclei were
counterstained with a DAPI solution (Cat# C1005, Beyotime, Shanghai,
China). The stained cells were imaged by using a confocal fluorescence
microscope.
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3

Tumor Cell Line Characterization Protocol

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The VX2 tumor cell line was purchased from Jennio Biotech (China). HepG2 and Huh7 cell lines, LO2 cell lines, and special culture media were obtained from iCell (China). Dulbecco's modified Eagle's medium (DMEM), fetal bovine serum (FBS), penicillin-streptomycin (Pen-Strep), and trypsin-EDTA solution were supplied by Gibco (USA). Hexa-histidine (His6) was synthesized by Zhuantai Biocom (China). All chemicals, including 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), polyvinylpyrrolidone (PVPON, Mw∼58k), zinc nitrate hexahydrate, sodium hydroxide, and hydrochloric acid, were provided by Aladdin (China). Cell counting kit-8 (CCK-8) was purchased from GLPBIO (USA). Live/dead cell staining kits were obtained from APExBIO (USA). The Annexin V-Fluorescein Apoptosis Assay Kit was supplied by Multisciences (Beijing, China). DOX, crystal violet ammonium oxalate, methyl thiazolyl tetrazolium (MTT), and phosphate-buffered saline (PBS) were purchased from Solarbio (China). Actin-Tracker Green-488, Hoechst 33342, and colorimetric TUNEL Apoptosis Assay Kits were provided by Beyotime (China). Lipiodol was obtained from Guerbet (France). Ki-67 antibodies and vascular endothelial growth factor (VEGF) were obtained from Abcam (Cambridge, UK).
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4

Immunofluorescent Localization of Tight Junction Protein Zo-1

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After fixation in 4% paraformaldehyde, permeabilization in 0.1% Triton X-100 and blockade with 1% bull serum albumin, the cells were incubated with anti-Zo-1 (Beyotime, Beijing, China) at 4 °C overnight and then goat anti-rabbit IgG secondary antibody (Abcam, Cambridge, UK) and Actin-Tracker-Green-488 (Beyotime, Beijing, China) for 1 h at room temperature. After removing the secondary antibodies, DAPI (Beyotime, Beijing, China) was applied to the cells. Images were taken with a fluorescence microscope (Olympus, Hamburg, Germany).
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5

Intracellular Internalization of ADSC-Derived EVs and NVs

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To explore the intracellular internalization, ADSC-EVs and ADSC-NVs were labeled with PKH26 red fluorescent cell linker (Sigma, MINI26-1KT) according to the manufacturer’s instructions. Human umbilical vein endothelial cells (HUVECs) purchased from the American Type Culture Collection (Rockville, Md.) were used as recipient cells. The cells were incubated in endothelial cell medium (ScienceCell, #1001) supplemented with 5% fetal bovine serum (FBS; ScienceCell, #0025), 1% endothelial cell growth supplement (ECGS; ScienceCell, #1052) and 1% penicillin-streptomycin antibiotic. HUVECs were incubated with PKH26-labeled EVs or NVs in equivalent number of particles for 1, 2, 3 or 4 h, washed three times with PBS, and then stained using Actin-Tracker Green-488 (Beyotime Biotechnology, C2201S). The nuclei were stained using DAPI staining solution (Beyotime Biotechnology, C1006). Samples were observed under a confocal scanning microscope (Nikon, C2+). The internalization rate of ADSC-EVs and ADSC-NVs was evaluated by calculating area ratio between ADSC-EVs/ ADSC-NVs and HUVECs using ImageJ software.
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6

Visualizing Stress Fiber Formation in VSMCs

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HA-VSMCs were seeded into a 6-well plate and then transfected with miR-335-5p mimic or NC mimic, SP1/pcDNA3.1 or pcDNA3.1 and SP1/pGPH1 or pGPH1 using Lipofectamine 2000 according to the manufacturer’s protocol for 24 h. The cells were then treated or not treated with PDGF-BB (20 ng/mL) for 24 h at 37°C. The cells were washed with PBS and fixed with 4% formaldehyde in 6-well dishes for 20 min at room temperature. The cells were subjected to three 5-min washes with PBST (PBS containing 0.1% Triton X-100) at room temperature and incubated with Actin-Tracker Green-488 (1:200, C2201S; Beyotime) in the dark for 1 h at 4°C. The cell nuclei were stained with DAPI (C1005; Beyotime) and the cells were subjected to three 5-min washes with PBST at room temperature. Fluorescence images were obtained under the TE2000-U fluorescence microscope. The average integral optical density of the stress fibers in 6 visual fields was quantified using ImageJ 2x software (National Institutes of Health, Bethesda, USA).
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7

Visualizing EV Uptake in SCAPs

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PKH26 (Umibio, Shanghai, China) was diluted in Diluent C and incubated with EVs for labeling and tracing EVs. After sequentially centrifuged as mentioned above, PKH26-labeled EVs were added to SCAPs and incubated for 48 h, cells were fixed with 4% paraformaldehyde and stained with Actin-Tracker Green-488 (Beyotime, Shanghai, China) for visualizing F-actin and 4′,6-diamidino-2-phenylindole (DAPI) for cell nucleus. The endocytosis of EVs by SCAPs was observed by confocal microscopy (Zeiss, Oberkochen, Germany).
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8

Actin Cytoskeleton Visualization via Fluorescence

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According to the instruction of Actin-Tracker Green-488 (Beyotime, Shanghai, China), the cells were washed twice with PBS, fixed with 3.7% paraformaldehyde with PBS for 15 min, washed twice with 0.1% Triton-X100/PBS, Added Actin-Tracker Green and incubated for 30 minutes. Using fluorescence microscopy to observe changes in actin cytoskeleton and photograph.
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9

Cell Line Engineering and In Vivo Assays

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Lipofectamine 3000 was bought from Thermo Fisher Scientific (L3000015). The cryopreservation medium (NCRC-10001-50) was purchased from Cyagen Biosciences. CDK4 CRISPR-Cas9 knockout plasmid (sc-400148) was purchased from Santa Cruz. Actin-Tracker Green-488 (C2201S) was bought from Beyotime Biotechnology. Lentivirus expressing luciferase was purchased from HANBIO. A TUNEL assay kit (Red AF647) was obtained from Procell. Picogreen was purchased from Yeasen Biotechnology. A549 and H226 cell lines were obtained from the American Type Culture Collection. A549 and H226 cell lines were cultured in F12K medium and RPMI 1640 medium, which contain 10% fetal bovine serum and penicillin/streptomycin (100 U ml−1; Biosharp) at 37°C in 5% CO2. Five-week BALB/c nude mice (female/male) were obtained from Zhejiang Vital River Laboratory Animal Technology. Mouse study was conducted in accordance with the protocol approved by Animal Ethics Committee of Zhejiang University (ZJU20230329).
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10

Visualizing F-Actin Reorganization in Cells

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We conducted microfilament staining assay for detecting recombination and morphologic alterations of F-actin within CC cells. SW480/SW620 were cultured on six-well plates and stimulated with CXCL10. Immunol Staining Fix Solution (Beyotime) fixed the cells for 15 min, and Actin-Tracker Green-488 (Beyotime) was added into the culture well for dark incubation for 30 min. After rinsing cells by PBS twice, we observed them using the fluorescence microscope.
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