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19 protocols using anti inos

1

Protein Expression Analysis by Western Blot

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Total protein samples were extracted using RIPA lysis buffer. A nucleic acid and protein microanalyzer (Molecular Devices, United States) was used to determine protein concentrations. Western blotting was performed according to a published protocol (Wu et al., 2022 (link)). Primary antibodies were incubated overnight at 4°C as follows: anti-iNOS (Proteintech, 22226-1-AP, 1:5000), anti-PD-L1 (Proteintech, 66248-1-Ig, 1:3000), anti-Arg-1 (Proteintech, 16001-1-AP, 1:2000), anti-GADPH (Proteintech, 60004-1-Ig, 1:10000), anti-CD9 (Proteintech, 20597-1-AP, 1:2000), anti-CD63 (Proteintech, 25682-1-AP, 1:2000), anti-TSG101 (Proteintech, 28283-1-AP, 1:3000), anti-JAK2 (Cell Signaling Technology, 3230S, 1:2000), anti-STAT3 (Proteintech, 10253-2-AP, 1:5000), anti-p-STAT3 (Cell Signaling Technology, 9145S, 1:1000), and anti-IL-6 (Cell Signaling Technology, 12912S, 1:1000). The HRP-conjugated secondary antibody (ZSGB-BIO, ZB-2305; ZB-2301) was incubated for 1 h at room temperature. The signal was detected using the ECL method (Beyotime, China, P0018FS). Band density was quantified using ImageJ software (NIH, Bethesda, MD, United States) for the grayscale intensity of each protein.
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2

Western Blot Analysis of Inflammatory Markers

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Radio‐immune precipitation assay lysis buffer (Beyotime, P0013B) was used for tissue and cell lysates. BCA assay kit (Beyotime, P0012S) was used for protein concentration determination. After 30 µg protein amount was separated using 4%–20% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis, it was transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% skim milk at 37°C for 2 h and then incubated with primary antibodies at 4°C overnight and secondary antibodies at 37°C for 1 h. After washing, the membranes were visualized by an ECL Kit (MedChemExpres) and quantified with ImageJ software. All experiments were repeated in triplicate for statistics. Following primary antibodies were used: anti‐iNOS (1:1000, Proteintech), anti‐COX‐2 (1:1000, Proteintech), anti‐IL‐6 (1:1000, Proteintech), anti‐TLR4 (1:1000, Proteintech), anti‐MYD88 (1:1000, Proteintech), anti‐NF‐κB‐p65 (1:1000, Affinity), anti‐NF‐κB‐p‐p65 (1:1000, Affinity), anti‐CD74 (1:1000, Abcam), β‐Actin (1:2000, Abcam).
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3

Fluorescent Tissue Imaging Protocol

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Tissue slices were individually stained with primary antibodies (anti‐Col‐I, anti‐CD31, anti‐iNOS, anti‐TGF‐β1, anti‐MMP‐8, and anti‐MMP‐9, all obtained from Proteintech, Wuhan, China). After thorough rinsing, the slices were treated with secondary antibodies labeled with FITC (green fluorescence) or TRITC (red fluorescence) for color visualization. The nuclei were stained with a 4′,6‐diamidino‐2‐phenylindole (DAPI) containing mounting solution. Slides were then observed under an inverted fluorescence microscope (IX53, Olympus).
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4

Multimarker Immunostaining for Cell Characterization

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Immunostaining was performed as directed by the manufacturer. The following antibodies were utilized: anti-F4/80 (Abcam, ab6640), anti-iNOS (proteintech, 80517- 1-RR), anti-CD31 (Santa Cruz, sc-376764), anti-FAP (Bioss, bs-34078R), anti-COL II (Abcam, ab34712), anti-VIMENTIN (Santa Cruz, sc-6260), anti-CD206 (Abcam, ab64693). Alexa 594 or 488 dye-labeled secondary antibodies (Jackson ImmunoResearch 383 Laboratories, Inc.) followed by overnight incubation at 4 ​°C.
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5

Immunohistochemical Analysis of Gastric Pathology

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Longitudinal stomach tissue strips from H. felis-infected or uninfected mice were fixed with 10% formaldehyde, embedded in paraffin, and cut into 4-μm-thick sections. Hematoxylin and eosin staining was performed as per standard protocols, and the presence of lymphoid follicles and lymphoepithelial lesions (LELs) were recorded. Sections of murine stomach or human MALT lymphoma tissues were subjected to heat-induced epitope retrieval and then incubated overnight with anti-TCRγδ (Abcam, Cat. no. ab118864), anti-IL-17 (Abcam, Cat. no. ab79056), anti-IL-1β (Abcam, Cat. no. ab9722), anti-IL-23 (Santa Cruz, Cat. no. sc-50303), anti-Arg-1 (Proteintech, Cat. no. 16001-1-AP), anti-iNOS (Proteintech, Cat. no. 18985-1-AP), anti-Gr-1 (R&D systems, Cat. no. MAB1037-100), anti-CD11b (Abcam, Cat. no. ab133357), anti-CD33 (Abcam, Cat. no. ab11032), and anti-CD11b (Abcam, Cat. no. ab133357) primary antibodies at 4°C. The following day, the sections were probed with biotin–streptavidin horseradish peroxidase-conjugated secondary antibody, and stained using 3,3′-diaminobenzidine reagent. For immunofluorescence, fluorochrome-conjugated secondary antibodies were used. Positively stained cells were counted in five random non-overlapping fields (400× magnification; Nikon, Ni-U) using ImageJ software. The histoscore of each biomarker was evaluated according to Table 2.
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6

Histological and Immunohistochemical Analysis of Liver Tissue

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Liver specimens were fixed in 4% paraformaldehyde for at least 24 h and then embedded in paraffin. Sections (4 μm thick) were cut for H&E, Sirius Red staining, and Perls’ Prussian Blue staining.
For immunohistochemistry, formalin-fixed paraffin-embedded sections were deparaffinised and used to assess α-smooth muscle actin (α-SMA) (1:400, cat# 19245, Cell Signaling Technology, MA, USA), F4/80 (1:200, cat# 70076, Cell Signaling Technology), 8-OHdG (1:200, cat# sc-66036, Santa Cruz, USA) and Ki67 (1:400, cat# 12202, Cell Signaling Technology). Images were acquired using a microscope (Nikon Ci-E).
For immunofluorescence, liver cryosections were deposited on glass slides. After blocking with PBS containing 1% bovine serum albumin and 0.2% Triton X-100, the sections were incubated with primary antibodies, including anti-F4/80 (1:200, cat# ab6640 Abcam, USA), anti-STING (1:200, cat# 19851-1-AP, Proteintech), anti-CD68 (1:200, cat# 26042, Cell Signaling Technology), anti-iNOS (1:200, cat# 18985-1-AP, Proteintech), and anti-CD206 (1:200, cat# 18704-1-AP, Proteintech) at 4 °C overnight. The secondary antibodies were conjugated with Alexa 488 (1:200, cat# 4408, or # 4412, Cell Signaling Technology) or Alexa 594 (1:200, cat# 8889, Cell Signaling Technology), and the nuclei were counterstained with DAPI.
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7

Chondrocyte Inflammatory Signaling Pathway

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Limonin (purity ≥ 98%), DMSO, Safranin O, collagenase type-II, Fast Green FCF, and hematoxylin were provided by Solarbio (Beijing, China). Recombinant rat IL-1β was purchased from Multi Sciences Biotech, Co., Ltd. (Hangzhou, China). Anti-Collagen II, Aggrecan, ADAMTS5, and MMP13 were purchased from Abcam (Cambridge, UK). Anti-p65, IκBα, and Lamin-B1 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-INOS, COX-2, HO-1, NQO1, SOD1, Nrf2, and GAPDH were purchased from Proteintech (Wuhan, China). Reagents for cell culturing were purchased from Gibco (Grand Island, USA).
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8

Western Blot Protein Expression Analysis

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The whole cell protein was extracted with RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China, Cat#S711-001S), and the protein concentration was measured with BCA protein analysis kit (Beyotime Biotechnology, Cat#P0012). Equal amounts of total protein were loaded on 6%–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and then the separated proteins were transferred to PVDF membrane (Merck Millipore, Darmstadt, Germany, Cat#IPVH00010). After blocking with 5% skim milk, membranes were incubated with primary antibodies at 4 °C overnight, followed by incubation with the IRDye conjugated secondary antibody for 1 h at room temperature. The antibodies used in this study were as follows: Anti-β-Actin (1:1000, Abcam, Cambridge, MA, USA, Cat#ab97626), Anti-GOLPH3 (1:1000, Abcam, Cat#ab91492), Anti-COX-2 (1:1000, Proteintech, WuHan, China, Cat#27308-1-AP), Anti-iNOS (1:1000, Proteintech, Cat#18985-1-AP) and IRDye-conjugated (680RD Goat anti-Mouse/800CW Goat anti-Rabbit) IgG secondary antibodies (1:10000, Li-COR Biosciences, Lincoln, NE, USA, Cat#926-68070/Cat#926-32211). Membranes were imaged with an Odyssey CLX Infrared Imaging System (Li-COR Biosciences).
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9

Immunohistochemical Analysis of α-SMA and iNOS in Carotid Arteries

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The expression of α-smooth muscle actin (α-SMA) and inducible nitric oxide synthase (iNOS) in carotid artery tissues was determined by immunohistochemical staining. In brief, 5-μm paraffin sections were immersed in antigen retrieval solution and heated for 10 min in a microwave oven. Then, the sections were then incubated with 3% H2O2 for 15 min at room temperature. After blocking with goat serum (Solarbio, Beijing, China) for 15 min at room temperature, the sections were incubated with primary antibodies separately at 4°C overnight (anti-α-SMA, 1:200, BOSTER, Wuhan, China; or anti-iNOS, 1:200, Proteintech, Wuhan, China). Biotinylated Goat anti-Mouse or Goat anti-Rabbit IgG (1:200, Beyotime, Haimen, China) were then added to the sections for 30 min at 37°C. After development with DAB and counterstaining with hematoxylin, the sections were photographed by a light microscopy.
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10

Investigating Akt, PI3Kγ, and SGK1 Signaling

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The mouse recombinant LIGHT protein (rLIGHT, cat#HY-P73837), PI3Kγ specific inhibitor (Eganelisib, IPI549, cat# HY-100716), and SGK1 inhibitor (GSK650394, cat#HY-15192) were purchased from MedChemExpress (MCE, New Jersey, USA). The primary antibodies anti-phospho-Akt (Ser473) (cat#4060) and anti-Akt (cat#4691)used for western blotting were purchased from Cell Signalling Technology (Danvers, Essex County, MA, USA); anti-PIK3CG (cat#A0266), anti-SGK1 (cat#A3936), and anti-phospho-Smad2/Smad3 (cat#AP1343) were purchased from ABclonal (Wuhan, China); anti-Smad2 (cat#ET1604-2), anti-Smad3 (cat#ET1607-4) and anti-PI3K p85α (cat# ET1608-70)were purchased from HUABIO (Hangzhou, China); and anti-F4/80 (cat#28463-1-AP), anti-CD3 (cat#17617-1-AP), anti-CD163 (cat#16646-1-AP), anti-ARG1 (cat#66129-1-Ig), anti-CD206(cat#60143-1-Ig), anti-iNOS (cat#18985-1-AP), anti-MCP1 (cat#66272-1-Ig), anti-TGFβ1 (cat#21898-1-AP), anti-collagen I (cat#14695-1-AP), anti-collagen III (cat#68320-1-Ig), anti-α-SMA (cat#14395-1-AP), anti-β actin (cat#20536-1-AP), and anti-GAPDH(cat#10494-1-AP) were purchased from Proteintech (Wuhan, China).
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