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10 protocols using nonspecific control

1

Silencing BZW2 by siRNA Transfection

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Human BZW2 siRNA and non-specific control (NC) siRNA were synthesized by RiboBio (Guangzhou, China) and were transfected into cells using Lipofectamine 2000 reagent (Invitrogen) following the manufacturer's protocol. The sequence of the siRNA targeting BZW2 was GGTCTTCTGTGGACATGTA. For proliferation and cell cycle analyses as well as RNA extraction and western blotting, cells were used 48 h after transfection.
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2

HER2, HER3, and Ago2 Targeting Protocol

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Trastuzumab (Herceptin) was purchased from a pharmacy. PE-anti-HER2, APC-anti-HER3 antibody was from BioLegend (San Diego, California). Ago2-antibody was purchased from Abcam. All other antibodies were purchased from Cell Signaling Technology. The chemically synthesized specific siRNA, miRNA mimics, miRNA inhibitors, and non-specific control, as well as cholesterol-conjugated siRNA and miRNA mimics and control mimics, were purchased from RiboBio Co., Ltd. (Guangzhou, China).
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3

siRNA Knockdown of USP29 Protein

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Chemically synthesized short interfering RNA (siRNA) and a nonspecific control were purchased from RiboBio Co. Ltd. (Guangzhou, China) to knock down USP29. The siUSP29 sequences were the same as those of shUSP29.
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4

RNA Interference Regulates C/EBPα and c-myc Expression

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Chemically synthesized c-myc- and C/EBPα-specific small interfering RNA (siRNA) and nonspecific control were purchased from RiboBio Co., Ltd. (Guangzhou, China). The sequences of the c-myc siRNAs were 5′-CTATGACCTCGACTACGAC-3′ and 5′-CTCGGTGCAGCCGTATTTCTA-3′, and the C/EBPα siRNA sequences were 5′-CCAAGAA GUCGGUGGACAADTDT-3′ and 5′-CGACGAGTTC CTGGCCGAC-3′. We purchased cholesterol-conjugated miR-122 mimic and negative control from Ribobio (Guangzhou, China) for RNA delivery in vivo. Reagents and antibodies were obtained as follows: hIL-6 (recombinant human Interleukin 6) and hTNFα (recombinant human tumor necrosis factor α) were purchased from Sinobio Biotechnology Co., Ltd. Shanghai China; DNase I (RNase-free) was purchased from Invitrogen; the Superscript RT reagent kit was from TaKaRa Bio Inc., Shiga, Japan; rabbit anti-human C/EBPα (sc-61 X) and mouse anti-c-myc (sc-40) monoclonal antibodies were from Santa Cruz Biotechnology; rabbit IgG was from Sigma; mouse anti-human actin, GAPDH and horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Zhongshan Goldenbridge Biotechnology, China; the ECL-Plus chemiluminescence system was from Applygen Technologies, Beijing, China.
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5

Transfection of miRNA Mimics and Inhibitors

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Asynchronously growing cells were seeded in 6-well plates at 2 × 105 cells/well. Hsa-miRNA-30a mimic, hsa-miRNA-30a inhibitor, and nonspecific control were purchased from RiboBio (Guangzhou, China). Transfections were performed using the Lipofectamine 2000 Kit (Invitrogen) according to the manufacturer’s instructions.
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6

Cyclin G1 Silencing via siRNA

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The chemically synthesized cyclin G1-specific siRNA, miR-122 mimic, and non-specific control, as well as the miR-122 inhibitor and non-specific control, were purchased from RiboBio Co., Ltd. (Guangzhou, China). The sequences of the cyclin G1 siRNA was: sense, 5’-TGTCCCATTGGCAACTGAC dTdT; antisense, 5’-GUCAGUUGCCAAUGGGACA TdTd. Rabbit anti-human cyclin G1 (clone F-5) was from Santa Cruz Biotechnology.
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7

PRPF19 Knockdown Using Lentiviral shRNA

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Chemically synthesized short interfering RNA (siRNA) and a nonspecific control were purchased from RiboBio Co. Ltd. (Guangzhou, China). PRPF19-specific shRNA with the following target site was cloned in the lentiviral vector pLKO.1-puro (Addgene, catalog no. 8453). shPRPF19: 5′- CCGGGAACGGATGTGGAAGGAAGAACTCGAGTTCTTCCTTCCACATCCGTTCTTTTTG-3′ and 5′- AATTCAAAAAGAACGGATGTGGAAGGAAGAACTCGAGTTCTTCCTTCCACATCCGTTC-3′.
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8

Modulation of SFRP1 by miR-542-3p

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SFRP1 and β‐actin antibody were purchased from Abcam (Cambridge, UK). MiR‐542‐3p mimic/inhibitor/inhibitor mutant and non‐specific control were obtained from RiboBio (Gua ngzhou, China). Lipofectamine 2000 was purchased from Invitrogen.
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9

miRNA Transfection in Cells

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MiR-9 mimics, non-specific control, miR-9 inhibitor, and random sequence were all purchased from RiboBio (Guangzhou, China). Cells were transfected at 40-60% confluence using Neofect siRNA transfection reagent (Neofect Tech, Beijing, China).
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10

Generating USP8 Knockdown Cell Lines

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To generate knocking down USP8 cell lines, chemically synthesized short interfering RNA (siRNA) and a nonspecific control were purchased from RiboBio Co. Ltd. (Guangzhou, China). The siUSP8 sequences are as follows: sense, #1: GCATAAAGGTGAAGTGGCA; #2: GAAAACAGGAAGAGAGGAT; #3: GCAAAGAGGGGCAAAGAAA.
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