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Lite software

Manufactured by Leica
Sourced in Germany

LITE software is a digital image processing and analysis solution developed by Leica. It provides tools for the acquisition, visualization, and analysis of microscopic images. The software offers a range of functionalities for image management, measurement, and quantification.

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12 protocols using lite software

1

Quantifying Cilia Length via Antibody Staining

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Antibody staining was performed as described previously (Westfall et al., 2003 (link)). Embryos were fixed at 8 to 10 somite stages in 4% paraformaldehyde in 1xPBS. Anti-acetylated tubulin primary antibodies (Sigma) are used at a concentration of 1:800 and fluorescent secondary antibodies (Life Technologies) are used at a dilution of 1:400. Cilia length is measured in the Leica Lite software and the average cilia length of all measured embryos in each treatment group is calculated. ANOVA test is used to detect any statistical difference.
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2

Visualizing Cerebral Paravascular Dynamics

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The mice were fixed on the stage of a two-photon microscope (Leica, DM6000, Wetzlar, Germany). ACSF was perfused during the whole surgical procedure to moisten the cranial window. Throughout the experiment, body temperatures were kept constant at 36.8°C with a feedback-controlled heating pad (RWD Life Science Company, Shenzhen, China). 0.2 mL rhodamine B-dextran 70 kDa was injected intravenously before imaging to visualize the vasculature. A Leica NA 0.95 and a 25× magnification water immersion objective were used at an excitation wavelength of 800 nm. The cerebral vasculature was initially imaged with 512 × 512-pixel frames from the surface to a depth of 200 μm with two μm z-steps. Tracer movement was detected with dual channels. Imaging panels 100 μm below the cortical surface were selected to analyze tracer movement of the PVS with Leica Lite software. For paravascular and interstitial movement, circular regions of interest (ROI) 25 pixels in diameter were centered on the surrounding penetrating arterioles. Mean pixel intensities within these ROIs were measured at each time of taking pictures.
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3

Immunofluorescence Imaging of Transfected Cells

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Cells were grown on glass coverslips, transfected, and infected as indicated above. At the relevant time point, the coverslips were washed with cold PBS, fixed in 4% paraformaldehyde in PBS for 10 min on ice, and permeabilized with PBS containing 0.2% Triton X-100 and 4% paraformaldehyde for an additional 10 min at room temperature. Aldehyde groups were quenched with 0.2 m glycine in PBS. Subsequent antibody incubations and washing steps followed standard protocols and have been described previously (48 (link)). Alexa Fluor fluorescent secondary antibodies were obtained from Molecular Probes and used at the manufacturer's recommended dilution. Coverslips were mounted on glass slides using Mowiol supplemented with DAPI. Imaging was performed on a Leica Sp5 confocal microscope using a ×63 oil objective. Image analysis was performed in the Leica Lite software (Leica Microsystems).
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4

Visualizing Peroxisome Dynamics in Arabidopsis

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The leaves, all the same age, in the experiments belonged to plants grown under similar conditions. Arabidopsis leaves were sliced and mounted in 30:70% (v/v) PBS/glycerol as described elsewhere (Rodríguez-Serrano et al. 2016) . The abaxial sections were examined using a TCS SP5 confocal laser scanning microscope (Leica Microsystems, Wetzlar, Germany). A minimum of seven confocal images were taken of one leaf of each plant, with at least five plants being used per experiment. Five independent experiments were carried out. At least 125 images per treatment were analyzed, meaning that thousands of peroxisomes were examined. The videos were generated by sequential images, with 15 frames being taken in the x, y, and t dimensions, and the number of peroxisomes and peroxules was analyzed using Leica Lite software (Leica Microsystems; Rodríguez-Serrano et al. 2016) .
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5

Light Field and Confocal Microscopy

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Light field images were obtained with an Olympus BX51 microscope equipped with an Olympus DP71 colour digital camera (Olympus, Tokyo, Japan). Fluorescent sections were analysed and photographed with a spectral laser scanning microscope (TCS-SP2, Leica, Wetzlar, Germany) using a combination of blue and green excitation lasers. Stacks of confocal images were acquired separately for each laser channel with steps of 0.8 µm or 2 µm along the z-axis. Z-projections of an average of 12 optical sections were done with LITE software (Leica). Photographs were adjusted for brightness and contrast, and plates were prepared using Corel Draw X3.
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6

Imaging Techniques for Retinal Analysis

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Brightfield images of haematoxylin–eosin-stained sections were taken with an Olympus BX51 microscope equipped with an Olympus DP71 camera. Images of fluorescent labelled sections were taken with a Leica TCS-SP2 confocal microscope with a combination of blue and green excitation lasers. Confocal optical sections were taken at steps of 1 μm along the z-axis. Collapsed images of the whole retinal sections (18 µm) were obtained with the LITE software (Leica, Wetzlar, Germany). For figure preparation, contrast and brightness of the images were minimally adjusted using Adobe Photoshop CS4 (Adobe, San Jose, CA, USA).
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7

Quantifying Cell Marker Expression and Apoptosis

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Cell cultures were fixed in 4% paraformaldehyde in PBS or with paraformaldehyde/PBS followed by ice-cold acidic ethanol and HCL for BrdU staining [20 , 22 (link), 33 (link)]. Analyses performed using a confocal laser microscope and computer assisted image analysis (Leica). Quantification of the amount of cells expressing a given marker or marker combinations was determined relative to the total number of DAPI-labeled nuclei or Tuj1+ cells using the Leica lite Software and three-dimensional overlay to avoid false-positive/negative overlay and double counting.
Caspase-3 activity was evaluated as a marker of cell death [19 (link),20 ], using the fluorogenic substrate DEVD-AFC (Ac-Asp-Glu-Val-Asp (DEVD)-pNA (Upstate Biotechnology). Samples were analyzed in a plate reader at 405 nm and enzymatic activity is expressed as arbitrary fluorescent units [20 ,21 ,33 (link)].
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8

Fluorescent Imaging with Confocal Microscopy

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Fluorescent sections were photographed with the Leica TCS-SP2 scanning microscope with a combination of blue and green excitation lasers. Confocal images were acquired separately for each laser channel with steps of 2 μm along the z-axis, and collapsed images were obtained with the LITE software (Leica). Light field images were obtained with an Olympus BX51 microscope equipped with an Olympus DP71 color digital camera. Images were adjusted for contrast, brightness and intensity using Corel Draw X7.
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9

Multimodal Microscopy Imaging Protocol

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Fluorescent sections were photographed with the Leica TCS-SP2 scanning microscope with a combination of blue and green excitation lasers. Confocal images were acquired separately for each laser channel with steps of 1 μm along the z-axis, and collapsed images were obtained with the LITE software (Leica). On the other hand, light field images were obtained with an Olympus BX51 microscope equipped with an Olympus DP71 color digital camera. Both fluorescent and light field photographs were adjusted for contrast, brightness, and intensity using Corel Draw X7. Plates also were prepared using the same software.
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10

Fluorescent Microscopy Imaging Protocol

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Fluorescent sections were photographed with a Leica TCS-SP2 spectral confocal scanning microscope with an appropriate combination for blue and green excitation lines. Confocal images were acquired separately for each laser channel with steps of 2 μm along the z-axis, and collapsed images were obtained with the LITE software (Leica). Some sections were photographed with an Olympus DP70 colour digital camera fitted on an Olympus AX70 fluorescence microscope. Light field images were obtained with an Olympus DP71 colour digital camera fitted on an Olympus BX51 microscope. Images were adjusted for contrast, brightness and intensity, and plates were prepared using Corel Draw X7.
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