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Puromycin medium

Manufactured by Thermo Fisher Scientific

Puromycin medium is a selective growth medium used in cell culture applications. It contains the antibiotic puromycin, which inhibits protein synthesis and allows for the selection of cells that have been successfully transfected with a puromycin resistance gene.

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4 protocols using puromycin medium

1

Virus Infection and Titer Quantification

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In total, 1.11 × 105 cells in a volume of 1 ml were seeded in six-well dishes and incubated overnight at 37 °C, 5% CO2. The virus stock was first diluted 1/40 followed by four five-fold serial dilutions in ice-cold medium containing 48 μg/ml polybrene (TR-1003-G, EMD Millipore) as the virus diluent (for a final concentration of 8 μg/ml). In total, 0.2 ml of each virus suspension was used to infect five wells, while, a sixth well was treated with 0.2 ml of virus diluent alone. Plates were returned to the incubator for 5 h incubation after which time each well was replenished to 2 ml with culture medium and incubated a further 48 h. Cells from each virus dilution infection well were harvested, and 10,000 cells in 100 μl were re-plated to a 96-well plate. Following overnight incubation, wells were treated with 12.5 μl of 72 μg/ml puromycin medium (A1113803, Thermofisher) (for a final concentration of 8 μg/ml), and replicate wells were treated with an equivalent volume of medium. After 72–96 h treatment, the proportion of infected, puromycin-resistant cells was determined by a viability assay using the CellTiter-Glo method, and infectious virus titer was calculated based on the virus volume used (see Supplementary Information Extended Methods).
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2

Lentiviral Knockdown of YAP in SGC7901 Cells

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In our previous study (11 (link)), we successfully synthesized a lentiviral vector small hairpin (sh)RNA (5′-CTCAGGATGGAGAAATTTA-3′) targeting the YAP gene, which efficiently inhibited YAP expression at the messenger (m)RNA and protein level in vitro. A control vector carrying a sequence (5′-TTCTCCGAACGTGTCACGT-3′) unrelated to the human gene was used as a negative control. Subsequently, these vectors were transfected into SGC7901 cells separately. During transfection, cells were seeded in a 24 well plate with confluence reaching 80% prior to transfection. A total of 4 µl Lipofectamine 2000® (11668–027; Thermo Fisher Scientific, Inc.) and 5 µg plasmid DNA were mixed in Opti-MEM medium (31985–088; Thermo Fisher Scientific, Inc.) and added to the cells of each well according to manufacturer's protocol. Cells were selected for stable expression by culturing in puromycin medium (Thermo Fisher Scientific, Inc.) for 6 weeks. A total of 3 experimental groups were designed as follows: The YAP shRNA vector-transfected cells (YAP-shRNA group), negative control vector-transfected cells (NC group) and untransfected cells (CON group).
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3

Cloning and Manipulation of GLS1 and IQGAP1 Genes

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The human GLS1 gene (GenBank accession number 2744) and IQGAP1 gene (GenBank accession number 8826) were cloned by OriGene Technologies Inc (Rockville, Rockwell, MD, USA). siGLS1 was achieved by using the Lipofectamine 2000 Kit (11668019, Invitrogen). Plasmids of shIQGAP1 and shGLS1 (pMD2.0G and psPAX) were purchased from Genechem Company (Montreal, QU, Canada). Plasmid of CDC42‐WT, CDC42‐G12V, and CDC42‐T17N were purchased from GeneCopoeia Company (Guangzhou, Guangdong, China). NCI‐N87‐TR and SNU216‐TR cells were infected with lentivirus carrying corresponding plasmid, respectively, and selected with 1 μg/mL puromycin medium (A1113803, Invitrogen). The gene or amino acid sequences are listed in Supplementary Tables S2‐S3.
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4

Knockdown and Overexpression of PER1 and HK2

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For gene knockdown of PER1, cells were stably transfected with GV248-hU6-MCS-Ubiquitin-EGFP-IRES-Puro-PER1 constructs (Genechem). Transfected cell lines were selected with 1 µg/mL puromycin medium (Invitrogen). Overexpressing PER1 or HK2 and empty vector (GV141-CMV-MCS-3FLAG-SV40-Neomycin) plasmids were purchased from Genechem Company. Ablation of clock genes and other genes was performed by transfection with siRNA duplex oligos, which were synthesized by Ribobio Company. Cell transfection was performed with Lipofectamine 2000 (Invitrogen), as described previously in the manufacturer's protocol. The sequences used in this study are listed in Supplementary Table S4. qPCR and Western blotting were used to verify the efficiency of the sequence.
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