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6 protocols using tenofovir

1

Tenofovir Dose-Response Evaluation in Keratinocytes

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Tenofovir (CAS 147127-20-6; T018500, Toronto Research Chemicals, Canada) was dissolved in phosphate-buffered saline, 7% dimethyl sulfoxide, and 5% 5N sodium hydroxide to result in a 767 mM stock solution, and further diluted in culture media for addition to keratinocyte cultures in concentrations ranging from 0.05 to 32 mM. Based on initial titration experiments in which we measured the intracellular concentration of Tenofovir diphosphate, the active cellular metabolite of Tenofovir, by liquid chromatography-tandem mass spectrometry (performed in the laboratory of Dr Craig Hendrix, Johns Hopkins University), concentrations in the culture media at the lower end (0.05–0.5 mM range) were estimated to be equivalent to the active concentrations likely achieved by topical Tenofovir 1% gel (35 mM) in mucosal epithelial cells in vivo (Hendrix et al., 2013 (link); Louissaint et al., 2013 (link)). In all experiments, control keratinocytes were cultured in parallel without Tenofovir. Keratinocytes were harvested at pre-determined time points, split into several aliquots, and pelleted. Pellets were frozen and stored at −80°C either as dry pellets for protein assays or after suspension in RNAprotect Cell Reagent (Qiagen) for RNA assays.
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2

Synthesis and Procurement of Antiviral Compounds

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NVR 3-778 was synthesized by WuXi AppTec (Wuhan, China). Lamivudine, tenofovir, tenofovir disoproxil fumarate, and entecavir were purchased from Toronto Research Chemicals (Toronto, Canada).
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3

Radiolabeled Antiretroviral Compounds Protocol

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[14C]Tetraethylammonium (specific activity = 55 mCi/mmol) and [3H]efavirenz (specific activity = 5 Ci/mmol) were purchased from American Radiolabelled Chemicals (Missouri, USA). Lopinavir was a gift from Abbott (Illinois, USA). Raltegravir sodium salt was a gift from Merck (New Jersey, USA). Etravirine was a gift from Janssen (Buckinghamshire, UK). [14C]Darunavir (specific activity = 39.19 mCi/mmol), non-radiolabelled darunavir and non-radiolabelled rilpivirine were gifts from Tibotec (Mechelen Belgium). Atazanavir was a gift from Bristol-Myers Squibb (New York, USA). Nevirapine was a gift from Boehringer Ingelheim (Berkshire, UK). Ritonavir was a gift from Abbott (Illinois, USA). Tenofovir, efavirenz and lamivudine were purchased from Toronto Research Chemicals (Toronto, Canada). Amprenavir was a gift from GlaxoSmithKline (Middlesex, UK). Ultima Gold scintillation fluid was purchased from Perkin Elmer (Boston, USA). All other drugs and reagents were obtained from Sigma (Poole, UK).
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4

Radioactive Nucleotide Synthesis and Characterization

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Radioactive compounds including [3H]-dG (3000 DPM/pmol), [3H]-dA (3000 DPM/pmol), and [3H]-ETV (3000 DPM/pmol) were purchased from Moravek Biochemicals. ETV, adefovir, tenofovir, TDF, lobucavir, penciclovir, ganciclovir, and dideoxyguanosine were purchased from Toronto Research Chemicals. I-H (forodesine hydrochloride) was purchased from MedChemExpress. All other chemicals including EHNA and Ap5A were purchased from Sigma-Aldrich.
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5

Synthesis of NVR 3-1983 and BAY Compounds

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NVR 3-1983, BAY 41-4109, and BAY 41-4109-IE were synthesized by WuXi AppTec (Wuhan, China). Lamivudine, tenofovir, and tenofovir disoproxil fumarate were purchased from Toronto Research Chemicals (Toronto, Canada).
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6

Genotyping of Tenofovir Alafenamide (TAF)

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TAF tablets (25 mg) were purchased from Gilead Sciences, Inc. (Foster City, CA, U.S.A). The reference standards of TAF, tenofovir and the respective stable isotope-labeled internal standards were supplied by Toronto Research Chemicals (Toronto, Canada). Whole Blood DNA Extraction Kits (QIAamp® DNA Blood Mini Kit) were purchased from Qiagen Inc (Valencia, CA, U.S.A). Complete Genotyping Reagent Kit for MassARRAY® Compact 384 was purchased from Sequenom Inc (CA, U.S.A). Formic acid, dimethyl sulfoxide, and ammonium hydroxide were purchased from Thermo Fisher Scientific (Framingham, MA, U.S.A), ammonium acetate from Sigma-Aldrich Fluka (St. Louis, MO), and high-performance liquid chromatography (HPLC) grade acetonitrile and methanol were from Merck KGaA (Darmstadt, Germany). Ultrapure water was prepared by the Milli-Q Reagent water system (Billerica, USA). All the other reagents and solvents were commercially available.
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