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Topspin 3.2 mac software

Manufactured by Bruker

Topspin 3.2 (Mac) is a software package developed by Bruker for processing and analyzing nuclear magnetic resonance (NMR) data. It provides a comprehensive suite of tools for acquisition, processing, and visualization of NMR spectra on Mac computers.

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2 protocols using topspin 3.2 mac software

1

Comprehensive Cell Wall Characterization by NMR

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Cell walls were characterised without fractionation using two-dimensional (2D) solution-state NMR (Kim and Ralph, 2010 (link); Mansfield et al., 2012 (link)). Straw (2-mm pieces) was pre-ground using a Mixer Mill MM400 (Retsch; 30/s vibrational frequency for 90–120 s). Samples were extracted three times with water, three times with 80% ethanol and once with acetone, then allowed to dry. The pre-ground extracted samples were ball-milled using a Fritsch Planetary micro mill Pulverisette 7 vibrating at 600 rpm with zirconium dioxide (ZrO2) vessels containing ZrO2 ball-bearings (10 mm × 10) with 5-min milling and 5-min cooling per milling cycle (cycle number depended on the amount of sample). The ball-milled samples were subjected to digestion (72 h × 2) to obtain ‘enzyme lignin’ (EL) by Cellulysin® cellulase from Trichoderma viridae (Calbiochem), at 35°C in acetate buffer (pH 5.0). The ELs were dissolved into DMSO-d6/pyridine-d5 (4:1 v/v) and subjected to NMR on a Bruker Biospin AVANCE-III 700 MHz spectrometer equipped with a 5-mm QCI 1H/31P/13C/15N cryoprobe with inverse geometry (proton coil closest to the sample). 2D-1H–13C HSQC spectra were acquired using Bruker’s pulse program (hsqcetgpsip2.2). Bruker’s Topspin 3.2 (Mac) software was used to process spectra. The central DMSO peak was used as internal references (δC: 39.51, δH: 2.49 ppm).
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2

Characterization of Cell Walls by 2D NMR

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Cell walls were characterised without fractionation using two‐dimensional (2D) solution‐state NMR (Kim and Ralph, 2010; Mansfield et al., 2012). Straw (2‐mm pieces) was pre‐ground using a Mixer Mill MM400 (Retsch; 30/s vibrational frequency for 90–120 s). Samples were extracted three times with water, three times with 80% ethanol and once with acetone, then allowed to dry. The pre‐ground extracted samples were ball‐milled using a Fritsch Planetary micro mill Pulverisette 7 vibrating at 600 rpm with zirconium dioxide (ZrO2) vessels containing ZrO2 ball bearings (10 mm × 10) with 5‐min milling and a 5‐min cooling per milling cycle (cycle number depended on the amount of sample). The ball‐milled samples were subjected to digestion (72 h × 2) to obtain ‘enzyme lignin’ (EL) by Cellulysin® Cellulase, Trichoderma viridae (Calbiochem), at 35 °C in acetate buffer (pH 5.0). The EL were dissolved into DMSO‐d6/pyridine‐d5 (4 : 1) and subjected to NMR on a Bruker Biospin AVANCE‐III 700 MHz spectrometer equipped with a 5‐mm QCI 1H/31P/13C/15N cryoprobe with inverse geometry (proton coil closest to the sample). 2D‐1H‐13C HSQC spectra were acquired using Bruker's pulse program (hsqcetgpsip2.2). Bruker's Topspin 3.2 (Mac) software was used to process spectra. The central DMSO peak was used as internal references (δC: 39.51, δH: 2.49 ppm).
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