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5 protocols using any kd sds page gels

1

Western Blot Analysis of PERK, eIF2α, and Phospho-eIF2α

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Cells were washed with PBS and lysed in SDS-PAGE loading buffer (1% SDS, 62.5 mM Tris–HCl pH 6.8, 10% glycerol). Lysates were sonicated and loaded on Any-kD SDS-PAGE gels (BioRad). Proteins were transferred onto nitrocellulose and probed with primary antibodies diluted in Tris-buffered saline supplemented with 0.1% Tween 20 and 5% BSA. The following antibodies were used: PERK (D11A8) (1:1000), eIF2α (#9722; Cell Signaling technology) (1:1000), phospho-eIF2α (Ser51) (44728G; Invitrogen). An HRP-conjugated secondary antibody (Amersham) was employed to detect immune-reactive bands using enhanced chemiluminescence (SuperSignal, Thermo Scientific).
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2

Western Blot Analysis of mABHD6

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Protein samples and ladders (Bio-Rad) were denatured at room temperature for 20 min in Laemmli buffer containing 5% β-mercaptoethanol and resolved on AnyKD SDS-PAGE gels (Bio-Rad). Gels were either stained using Commassie blue (Bio-Rad) or proteins transferred to polyvinylidene fluoride membranes (PVDF) for immunodetection according to the QIAexpress Detection and Assay Handbook using a 1:1,000 dilution of anti-mABHD6 (generously provided by Dr. Brown Laboratory, Cleveland, OH) and a 1:10,000 dilution of anti-rabbit secondary antibody. Proteins were visualized using the ECL Western Blotting Analysis System (GE Healthcare, Piscataway, NJ). A FluorChem Imaging System (Alpha Tech Corp., San Leandro, CA) was used to photograph developed gels and blots.
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3

Western Blot Analysis of Protein Samples

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Western blots were carried out as previously described (Sambrook and Russell, 2001 ). Protein samples were resolved using ‘Any kD’ SDS-PAGE gels (BioRad) and transferred to nitrocellulose membranes. Membranes were probed using the indicated primary and secondary antisera or with HRP-streptactin. For HRP-based detection, membranes were developed using ECL (GE Healthcare) and visualised using a BioRad Gel-Doc. For IR700- and IR800-based detection, membranes were visualised using a LI-COR Odyssey scanner.
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4

Activated CD8+ T Cell Protein Analysis

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Activated CD8+ T cells (1×106 per time point) were restimulated with 500 ng/ml OKT3 (0–4hr), washed in cold PBS, and lysed in 1% Nonidet P-40 (NP-40) lysis buffer (50 mM Tris [pH 7.4], 150 mM NaCl, 0.5 mM EDTA, 1% NP-40, 0.5% sodium deoxycholate, 1 mM Na3VO4, 1 mM NaF) containing complete protease inhibitors (Roche) for 30 min on ice. Cleared lysates were boiled in 2x reducing sample buffer, and resolved on Any kD SDS-PAGE gels (Bio-Rad). Proteins were transferred to nitrocellulose on a Trans-Blot Turbo system (Bio-Rad), blocked in 2% Tropix I-Block (Applied Biosystems) in TBS/0.1% Tween, and probed with the following Abs: anti-FASL (Ab3; EMD Millipore); anti-BID; anti-cleaved caspase 8 (Cell Signaling Technologies); anti-BIM (Enzo); anti-cleaved caspase 9, anti-cleaved caspase 3, anti-NUR77 (Biolegend); anti-geminin; anti-Cdt1 (Santa Cruz Biotechnology) and anti–β-actin (Sigma-Aldrich). Bound Abs were detected using HRP-conjugated secondary Abs (Southern Biotech, eBioscience) and ECL (Thermo Scientific).
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5

Autophagic Protein Regulation in T Cells

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Expanded effector T cells (1×106 per time point) deprived of IL-2 for 0–3 days were washed in cold PBS, and lysed in 1% Nonidet P-40 (NP-40) lysis buffer (50 mM Tris (pH 7.4), 150 mM NaCl, 0.5 mM EDTA, 1% NP-40, 0.5% sodium deoxycholate, 1 mM Na3VO4, 1 mM NaF) containing complete protease inhibitors (Roche Diagnostics Corp., Indianapolis, IN, USA) for 30 min on ice. For LC3 blotting, cells were lysed in 10 mM Tris-Cl, pH 6.8, 69 mM NaCl, 0.5 mM EGTA, 0.5% Triton X-100, 5% glycerol containing complete protease inhibitors (Roche Diagnostics Corp.) for 30 min on ice. Cleared lysates were boiled in 2x reducing sample buffer and resolved on Any kD SDS-PAGE gels (Bio-Rad Laboratories, Hercules, CA, USA). Proteins were transferred to nitrocellulose or PVDF (for LC3) on a Trans-Blot Turbo system (Bio-Rad), blocked with 2% Tropix I-Block (Thermo Fisher Scientific) or 6% milk (Bio-Rad) in TBS/0.1% Tween, and probed with the following Abs: anti-BIM (Enzo Life Sciences Inc); anti-PUMA (Cell Signaling Technology); anti-Bcl-xL, anti-Mcl-1, anti-Bcl-2 (BD Biosciences); anti-LC3B and anti-β-actin (Sigma-Aldrich). Bound Abs were detected using HRP-conjugated secondary Abs (Southern Biotech, Birmingham, AL USA; Agilent Technologies) and ECL (Thermo Fisher Scientific). Densitometry analysis was performed using ImageJ software (www.imagej.net). Full blots are included as Supplementary Information.
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