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Iraffinity 1 spectrophotometer

Manufactured by Shimadzu
Sourced in Japan, United States

The IRAffinity-1 is a Fourier Transform Infrared (FTIR) spectrophotometer manufactured by Shimadzu. It is designed to analyze the molecular composition and structure of various materials by measuring their infrared absorption spectrum. The IRAffinity-1 provides accurate and reliable data for applications in research, quality control, and process monitoring.

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37 protocols using iraffinity 1 spectrophotometer

1

Synthesis and Characterization of Quinoline Derivatives

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Melting points were measured on an Electrothermal IA 9300 melting point apparatus. The 1H- and 13C-NMR spectra were determined using a Bruker Fourier 300 (Bruker, Billerica, MA, USA) in deuterated chloroform (CDCl3) or deuterated dimethyl sulfoxide (DMSO-d6); chemical shifts (δ) are reported in ppm and J values in Hz. The peak multiplicity is designated by a singlet (s), doublet (d), triplet (t), doublet of doublets (dd), doublet of triplets (dt), and multiplet (m). The HR MS analysis was performed on a Bruker Impact II instrument (Bruker). The IR spectra were recorded on an IRAffinity-1 Shimadzu spectrophotometer (Shimadzu Corporation, Kyoto, Japan). Thin layer chrmatography (TLC) was carried out on silica gel 60 254F plates (Merck, Darmstadt, Germany) using ethyl acetate as an eluent, and the spots were visualized by UV light (254 nm). All new compounds were purified by column chromatography. Silica gel 60 was used as a solid phase, and ethyl acetate was used as the eluent. The starting compounds, chloro-quinolinesulfochlorides 1af and 3,6-dichlorosulfonylquinoline 9, were obtained according to previously described methods [32 ,33 (link),34 (link)].
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2

Synthesis and Characterization of 6,7-Dichloro-5,8-quinolinedione

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Melting points were measured on an Electrothermal IA 9300 melting point apparatus. The 1H- and 13C-NMR spectra were determined using a Bruker Avance 600 spectrometer (Bruker, Billerica, MA, USA) in CDCl3; chemical shifts (δ) are reported in ppm and J values in Hz. The peak multiplicity is designated as singlet (s), doublet (d), triplet (t), doublet of doublets (dd), doublet of triplets (dt) and multiplet (m). Mass spectra were recorded under EI conditions on a Finnigan MAT 95 instrument (Thermo Fisher Scientific, Waltham, MA, USA). High-resolution mass spectral analysis was performed on a Bruker Impact II instrument (Bruker). Infrared spectra were recorded on a IRAffinity-1 Shimadzu spectrophotometer (Shimadzu Corporation, Kioto, Japan). Thin layer chromatography (TLC) was carried out on silica gel 60 254F plates (Merck, Darmstadt, Germany) using a mixture of chloroform and ethanol (40:1 or 15:1, v/v) as an eluent. The spots were visualized by UV light (254 nm) and iodine. All new compounds were purified by column chromatography. As a solid phase silica gel 60 was used and the eluent was a mixture of chloroform and ethanol (40:1, v/v).
The starting compound, 6,7-dichloro-5,8-quinolinedione 1, was obtained according to methods described previously [16 (link),17 (link)]. M.p. 220–221 °C (lit. m.p. 219–221 °C [16 (link)]; 220–221 °C [17 (link)]).
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3

Characterization of Organic Compounds

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NMR spectra were measured on a Varian 400-MR spectrometer or a JEOL
JNM-ECS400 spectrometer, and chemical shifts are reported as the delta
scale in ppm using an internal reference [δ = 7.26 (CDCl3) or 3.31 (CD3OD) for 1H NMR and δ
= 77.16 (CDCl3) or 49.0 (CD3OD) for 13C NMR]. IR spectra were recorded on a Shimadzu IRAffinity-1 spectrophotometer.
HPLC was performed on a Shimadzu LC-20AT/SPD-20A. Optical rotations
were measured on a Horiba SEPA-300 polarimeter at the sodium D line.
UV and CD spectra were measured on a Shimadzu UV-2600 spectrophotometer
and a JASCO J-1500 spectropolarimeter, respectively. Melting points
were measured on a Yanaco melting point apparatus (uncorrected). Column
chromatography was carried out using Fuji Silysia BW-127 ZH (100–270
mesh), and thin layer chromatography was performed on Merck silica
gel 60 F254.
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4

Phytochemical Analysis of Marine Natural Products

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Optical rotations were measured using an Anton Paar MCP-500 instrument (Anton Paar, Graz, Austria) and the circular dichroism (ECD) as well as the UV spectra were collected on a Jasco 820 spectropolarimeter (JASCO, Tokyo, Japan) in the 200–400 nm range (under N2 protection). Infrared (IR) spectra were recorded on an IR Affinity-1 spectrophotometer (Shimadzu, Kyoto, Japan). All the 1D and 2D NMR data were recorded on a Avance-III 600 MHz HD spectrometer (Bruker, Bremen, Germany) with tetramethylsilane as an internal standard. HR-ESI-MS were collected on Bruker maXis high resolution mass spectrometer. A Shimadzu LC-20 AT equipped with an SPD-M20A PDA detector was used for HPLC analysis and preparative separations. An ACE 5 PFP-C18 column (250 × 10.0 mm, 5 μm, 12 nm) was used for semipreparative HPLC separation, meanwhile, a CHIRAL-MD (2)-RH column (250 × 10.0 mm, 5 μm) was used for chiral-phase chromatography (Guangzhou FLM Scientific Instrument Co., Ltd., Guangzhou, China). Column chromatography material: commercial silica gel (200–300 mesh) was purchased from Qingdao Marine Chemical Plant (Qingdao, China); Sephadex LH-20 gel was purchased from Amersham Biosciences, Shanghai, China). All analytical grade solvents were purchased from Guangzhou Chemical Regents Company (Guangzhou, China). The natural sea salt was produced by Guangdong Yueyan saltern (Guangdong, China).
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5

ATR-FTIR Analysis of Fibrinogen-RG Interactions

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IR spectra were recorded on an IR Affinity1 spectrophotometer (Shimadzu, Kyoto, Japan) using attenuated total internal reflection (ATR) attachment with a ZnSe crystal as a measuring element. The spectral resolution was 4 cm−1, and the number of accumulations was 512. The solutions of Fb and RG were successively passed through a flow microcell mounted on an ATR crystal for 1 h, alternating solutions of the studied substances and buffer 1. The spectrum for buffer 1 was registered first and used as background for all subsequent spectra, which allowed an automatic compensation for water and buffer salt contribution. Difference spectra were calculated subtracting the spectrum of pure adsorbed fibrinogen from the spectrum of fibrinogen with subsequently adsorbed RG. The spectrum of a pure RG solution was recorded separately, followed by washing, confirming a negligible adsorption of RG on the bare ATR surface. The cell was thermostated at 25 °C. The assignment of absorption bands in the IR spectra was based on the previous findings [36 (link),70 (link)]. All spectral manipulations were performed with OPUS 7.0 (Bruker) software.
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6

Detailed Characterization of Photophysical Properties

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All reactions were performed with the use of vacuum line and Schlenk techniques. Reagents were commercial grade and were used without further purification. 1H and 13C{1H} NMR spectra were obtained on a Bruker Avance dpx 400 spectrometer, and were recorded in CDCl3, or CD3CN solutions. 1H, 13C{1H} chemical shifts (δ) were determined relative to internal tetramethylsilane, Si(CH3)4 and are given in ppm. Low-resolution mass spectra were obtained by the staff at Cardiff University. High-resolution mass spectra were carried out by the staff at Cardiff University and the EPSRC National Mass Spectrometry Service at Swansea University, UK. Photophysical data was obtained on a Jobin Yvon-Horiba Fluorolog-3 spectrometer fitted with a JY TBX picosecond photodetection module in CHCl3The pulsed source was a 355 nm output. Luminescence lifetime profiles were obtained using the Jobin Yvon – Horiba FluoroHub single photon counting module and the data fits yielded the lifetime values using the provided DAS6 deconvolution software. Quantum yields using [Ru(bipy)3](PF6)2 as standard (1.6% in aerated MeCN)25 (link) and the following equation:IR spectra were recorded on an ATR equipped Shimadzu IRAffinity-1 spectrophotometer. UV-vis data were recorded as solutions on a PerkinElmer Lamda 20 spectrophotometer.
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7

Spectroscopic and Microscopic Characterization

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Fourier-transform infrared spectra were measured using an IRAffinity-1 spectrophotometer (Shimadzu, Japan). Fluorescence was recorded on an F-7000 spectrofluorometer (Hitachi, Japan). The morphology of the polymer was characterized by scanning electron microscopy (SEM, Zeiss-Sigma HD, Germany) with an energy dispersive X-ray detector (EDS) and transmission electron microscopy (TEM, FEI Tecnai G2 F20, USA).
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8

Synthesis and Characterization of Bioactive Triterpenoids

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DIC, DMAP, MTT, and stigmasterol were purchased from Sigma-Aldrich and used without further purification. β-Sitosterol was used as a commercial mixture with stigmasterol (70:30, respectively, MP Biomedicals). Betulinic and ursolic acids were previously isolated from Eriope blanchetti (Lamiaceae). Lupeol was obtained from the hexane extract of the roots of Bowdichia virgilioides (Fabaceae) by silica gel conventional column chromatography. Dichlorometane was refluxed with CaH 2 and distilled prior to use. All reactions were performed under argon atmosphere. Analytical thin layer chromatography (TLC) was performed on E. Merck TLC plates pre-coated with silica gel 60 F254 (250 μm thickness). Visualization was accomplished using UV light and potassium permanganate solution. Column chromatography was performed on silica gel 60-230 mesh. The melting points were uncorrected and determined on a MQAPF-302 apparatus. IR spectra were measured using a Shimadzu IR-Affinity 1 spectrophotometer. Nuclear magnetic resonance spectra were recorded on Varian (Inova-500) 500 MHz spectrometer in deuterated solvents.
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9

Synthesis and Characterization of Organic Compounds

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Reagents and solvents used for experimentation were of laboratory grade (SD Fine- ChemLimited, Mumbai; Molychem, Mumbai, India). Reaction monitoring was per-formed using thin-layer chromatography (TLC) with pre-coated Silica gel-G plates. Purification was performed through recrystallization. Thiele’s melting point apparatus was used to determine the melting points of all synthesized compounds. FT-IR spectra of all derivatives were recorded with Shimadzu IR AFFINITY-1 spectrophotometer using the KBr pellet technique. 1H NMR and 13C spectra data was obtained on Bruker Advance II 400 NMR Spectrometer using CDCl3 or DMSO-d6 as a solvent. Chemical shifts are expressed as δ (ppm) values.
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10

Characterization of Fungal-Synthesized Selenium Nanoparticles

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After 7 days of incubation, culture broths of the four positive fungal strains was used to separate the produced SeNPs. Cultures were filtered through Whatman No0.1 filter paper and SeNPs were collected by the centrifugation for 20 min at 20,000 rpm. The collected SeNPs were washed in ethanol thrice then in deionized water and dried in a hot air (50 °C) oven. Fine powders of SeNPs obtained from each fungal strain were separately dissolved in ethanol, prior to characterization, and treated ultrasonically for their dispersion (El-Sayed et al. 2020a (link)).
SeNPs from each fungal strain was characterized by the following techniques; UV-Vis spectroscopy (3101PC Spectrophotometer, Shimadzu, Japan), X-ray diffraction (XRD) patterns recorded in the range 20°≤2ϴ≤80° (Cu-Kα radiation, wavelength of 1.5406°A, at 40 KV, and 40 mA) using a D8 DISCOVER BRUKER diffractometer DAVINCI design, USA), Dynamic light scattering (DLS) analyses (Zetasizer Nano ZS, Malvern Instruments, Worcestershire, UK), High resolution Transmission Electron Microscopy (JOEL Transmission Electron Microscope, model 2100, Japan), and Fourier Transform Infrared spectroscopy recorded at 400–4000 cm− 1 (FT-IR, IRAffinity-1 spectrophotometer, Shimadzu, Japan).
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