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60 protocols using dulbecco modified eagle medium (dmem)

1

Cell Culture Conditions for Esophageal Cancer

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Overexpression and editing experiments were carried out using the FLO-1 esophageal adenocarcinoma cell line obtained from the ECACC General Cell Collection and CP-A (KR-42421) Barrett’s Esophagus cells from ATCC (catalogue number CRL-4027). FLO-1 cells were grown at 37 °C and five per cent CO2 in DMEM + 2 mM Glutamine + 10% FBS (Biosera) + 1/10,000 units of penicillin–streptomycin. CP-A cells were grown at 37 °C and five per cent CO2 in Keratinocyte serum-free medium with 50 µg ml−1 bovine pituitary extract and 5 ng ml−1 recombinant human EGF (17005042, Thermo Fisher). For passaging of CP-A cells, 250 mg L−1 soybean trypsin inhibitor in PBS was used (17075029, Thermo Fisher). Gene knockdown experiments were performed on OE19 cells obtained from the Francis Crick Institute cell services, OE33 cells obtained from the ECACC General Cell Collection and MFD1 cells obtained from the OCCAMS Consortium. OE19 and OE33 cells were grown in RPMI + 2 mM Glutamine + 10% FBS (Biosera) + 1/10,000 units of penicillin–streptomycin. MFD1 cells were grown in DMEM + 2 mM Glutamine + 10% FBS (Biosera) + 1/10,000 units of penicillin–streptomycin. All cells were maintained at 37 °C and five per cent CO2, validated by short tandem repeat analysis and routinely checked for mycoplasma contamination.
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2

Overexpression of Human SNAIL in B16F1 Melanoma Cells

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B16F1 melanoma cells were transfected with the plasmids containing human SNAIL. The pcDNA 3.1-human SNAIL construct was obtained from Prof. Muh-Hwa Yang (Taipei Veterans General Hospital, Taiwan). B16F1 melanoma cells were grown up to 85% confluence in 1 g/L glucose DMEM Biosera LTD (Courtaboeuf CEDEX, France) in presence of 0.1% penicillin/streptomycin and 10% FCS at 37 °C with 5% CO2. The Amaxa Nucleofector X Unit (Lonza, Basel, Switzerland) was used for the transfection of cells with 5 μg DNA/106 cells, according to the manufacturer’s instructions. Cells were cultured in medium with additional 200 μg/mL of Geneticin/G418 (Gibco/LifeTechnologies, Waltham, MA, USA). After two weeks of cell culture and refreshing selection media every two days, the colonies, which were well-separated, were selected. The culture of clones was scaled-up and SNAIL expression was verified by RT-PCR and Western blot analysis. Mock-B16F1 cells, transfected with an empty plasmid, cultured with media supplemented with G418 (200 μg/mL), were used as controls.
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Maintenance of Lung and Leukemia Cell Lines

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The human lung adenocarcinoma cell line A549, ABC‐1, human lung squamous cell carcinoma cell line LK‐2, EBC‐1, and the murine carcinoma cell line LLC were provided by the cell resource center for biomedical research of Tohoku University. The human lung adenocarcinoma cell lines H522 and H358 were purchased from the American Type Culture Collection (ATCC). The human lung adenocarcinoma cell line RERF‐LC‐MS was provided by the National Institutes of Biomedical Innovation, Health and Nutrition JCRB Cell Bank. These cell lines were maintained in DMEM (Nacalai tesque) supplemented with 10% FBS (Biosera, South Africa origin) and 1% penicillin‐streptomycin‐amphotericin B (PSA; Fujifilm Wako Pure Chemical Corporation) at 37°C in 5% CO2 in a humidified incubator. The human acute monocytic leukemia cell line THP‐1 and the murine macrophage cell line J774‐1 were also provided by the Cell Resource Center for Biomedical Research of Tohoku University. These cell lines were maintained in RPMI (Nacalai tesque) supplemented with 10% FBS and 1% PSA at 37°C in 5% CO2 in a humidified incubator.
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Culturing Cancer Cell Lines

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U87MG human malignant glioma, SK-MEL-28 human melanoma, SK-OV-3 human ovarian cancer, and A549 human lung cancer cell lines were purchased from ATCC. The cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; Biosera, Nuaille, France), supplemented with 10% heat-inactivated Fetal Bovine Serum (FBS; Biosera), and with 1% Penicillin/Streptomycin (Biosera). Cells were cultured in sterile T75 flasks with ventilation cap (Sarstedt, Nümbrecht, Germany) at 37 °C in a humidified atmosphere with 5% CO2 in ESCO CelCulture Incubator (ESCO, Friedberg, Germany). Manipulations with the cells were performed in biosafety cabinet (laminar) ESCO Sentinel Gold class II model AC2-4E8 (ESCO).
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5

Murine Mammary Adenocarcinoma 4T1.2 Cell Line

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Murine mammary adenocarcinoma 4T1.2 cells [24 (link)] were a gift from Robin Anderson (Peter MacCallum Cancer Centre, Melbourne, Australia) and were cultured in low glucose Dulbecco’s Modified Eagle’s Medium (DMEM) (Biosera, UK), 10% (v/v) foetal calf serum (FBS) (Biosera, UK) at 37 °C in 5% (v/v) CO2 in air. 4T1.2luc cells were transduced with lentivirus expressing luc2 under the control of human ubiquitin C promoter (Caliper, MA, USA). Cells were screened monthly for Mycoplasma contamination.
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Isolation and Characterization of Colonic Subepithelial Myofibroblasts

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SEMFs were isolated from colonic biopsies, as previously described [14 (link)]. Briefly, the collected colonic biopsies were washed and de-epithelialized using dithiothreitol 1 mM (DTT; Sigma-Aldrich, Darmstadt, Germany) and ethylene-diaminetetraacetic acid 1 mM (EDTA; Sigma-Aldrich, Darmstadt, Germany). Tissue denuded of epithelial cells was then transferred and cultured in Dulbecco’s Modified Eagle Medium (DMEM; Biosera, Nuaille, France) plus 10% fetal bovine serum (FBS; Biosera, Nuaille, France) in 5% CO2 at 37 °C. During culture, numerous nonadherent and adherent cells appeared in the culture flasks, and their culture medium was changed every 72 h. Denuded mucosal tissue was maintained in culture for up to 4 weeks, until numerous foci of myofibroblasts adhered on the flask surface. Tissue specimens were then removed, and intestinal myofibroblasts were characterized using immunofluorescence microscopy as being α-smooth muscle actin (α-SMA)- and vimentin-positive and desmin-negative, as shown in Figure 1.
Colonic subepithelial myofibroblasts at passages 2–5 were used in these studies. All experiments were performed with FBS-free media at 95% culture confluence with a stable ratio of supernatant volume-to-surface available for cell adhesion (1.5 mL:9.6 cm2). Colonic subepithelial myofibroblasts were passaged at a ratio of 1:3.
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7

Cytotoxicity Evaluation of Essential Oils

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HeLa cells were routinely cultured in DMEM (Biosera, Nuaille, France) containing 10% v/v fetal bovine serum (Gibco, Waltham, MA, USA), 100 U/mL penicillin and 0.1 mg/mL streptomycin (Biosera, Nuaille, France) and 2 mM glutamine (Biosera, Nuaille, France) and maintained at 37 °C in a humidified incubator with 5% v/v CO2/ 95% v/v air. Cells were seeded in 96-well plates (Corning, New York, NY, USA) at a density of 8000 cells per well and the next day were transfected with 50 ng DNA using the JetPRIME reagent according to the manufacturer’s instructions (Polyplus, Illkirch-Graffenstaden, France). In all transfections, 5 ng of the pFLuc plasmid used for normalization was also added. Then, 24 h after transfection, the EOs or their constituents were diluted in DMEM at a specific dilution, and 10 μL was dispensed into each well. Cells were incubated for 48 h, and then the supernatant (the cell medium) was collected for GLuc assays, while the cells were lysed for FLuc assays. GLuc and FLuc assays were performed as described below.
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8

MCF-7 Cell Line Culturing Protocol

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The MCF-7 cell line was obtained from the National Cell Bank of Iran (Pasteur
Institute, Tehran, Iran). The cells were cultured in Dulbecco’s modified Eagle’s medium
(DMEM, Biosera, France) supplemented with 10% FBS, penicillin (100 U/mL), and streptomycin
(100 μg/mL). They were maintained in 5% CO2 atmosphere at 37˚C. Cells were
cultured in 96-well culture plates at initial seeding number of 5×103 cells per
well.
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9

Cultivation of Human Osteoblast-like MG-63 Cells

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Human osteoblast-like MG-63 cell line (ECACC 86051601, Sigma Aldrich, St. Louis, MO, USA), obtained from an osteosarcoma of a 14 year old male, was cultivated in Dulbecco’s Modified Eagle’s Medium (DMEM, Biosera Europe, Nuaille, France) supplemented with 10% (v/v) fetal bovine serum (FBS, Biosera Europe, Nuaille, France), 100 U/mL penicillin, 100 mg/mL streptomycin (PAA Laboratories GmbH, Austria), and 2.5 mM stable glutamine (Diagnovum GmbH, Ebsdorfergrund, Germany), at 37 °C under 5% CO2 in a humidified incubator. Culture medium was refreshed as needed [36 (link)].
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10

Cell Culture of ESCC and HEK293T

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Human ESCC (KYSE‐30) and embryonic kidney (HEK293T) cell lines were purchased from the Pasteur Institute Cell Bank of Iran (http://en.pasteur.ac.ir/) and grown in RPMI 1640 medium (Biosera) and Dulbecco's modified Eagle's medium (DMEM; Biosera), respectively. Both culture media were supplemented with 10% heat‐inactivated fetal bovine serum (FBS; Gibco, USA), 100 U/ml, and 100 μg/ml penicillin‐streptomycin (Gibco, USA) at a humidified atmosphere 37°C with 5% CO2.
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