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7 protocols using β actin

1

Protein Expression Analysis by Western Blot

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Equal amounts of protein lysates were separated by SDS-PAGE and transferred onto PVDF membranes. Filters were probed with the following specific primary antibodies: anti-GCN5 (Santa-cruz), anti-AIB1 (BD Bioscience) anti-p21Cip1/Waf1 (BD Biosciences), PCNA (Abcam, Cambridge, MA, USA), β-actin (Sigma, St Louis, MO, USA), Akt and phosphorylated-Akt (Cell signaling, Danvers, MA, USA), Anti-histone H3 (acetyl K9) antibody-ChIP Grade (Abcam, Cambridge, MA, USA) anti-CyclinD1 (Abcam, Cambridge, MA, USA). Blots were then incubated with horseradish peroxidase-conjugated secondary antibody (Pierce, Rockford, IL, USA) and visualized by chemiluminescence. The band density was quantified by densitometry using Scion Image software and normalized to β-actin levels.
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2

Quantitative Analysis of Tight Junction Proteins

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IECs were lysed in buffer containing 0.1 M Tris-HCl (pH 7.5)/2% SDS/10% glycerol/5% 2-mercaptoethanol, boiled at 95°C for 5 min and centrifuged at 15000 rpm for 5 min and analyzed by reducing SDS-PAGE. Immunoblots were performed using antibodies against Claudin-1 (Abcam, Cambridge, UK, ab15098, 1∶100), Occludin (Applied Biosystems, 71–1500, 1∶250), Clock (Abcam, ab3517, 1∶200), Bmal1 (Abcam, ab3350, 1∶200) and β-actin (Santa Cruz, Texas, sc-1615, 1∶200). Quantitative analysis of Western blotting was done by using the Scion Image Software package and relative intensities of the target proteins to β-actin were shown.
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3

Western Blot Analysis of Microglia Markers

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One day after behavioral testing, six rats per group were decapitated for western blot analysis. DG regions were carefully dissected and immediately homogenized in lysis buffer with a cocktail of protease inhibitors. Protein concentrations were measured using the BCA assay kit (Beyotime, China). Equal amounts of protein from each sample were electrophoretically separated on 12% SDS-PAGE gels and transferred to PVDF membranes for analysis. The primary antibodies used were polyclonal rabbit anti-CD45 (1 : 1000, Abcam, USA), anti-CD11b (1 : 1000, Abcam, USA), and anti-β-actin (1 : 8000, Santa Cruz Biotechnology). The secondary antibody was horseradish peroxidase-conjugated to mouse anti-rabbit/mouse IgG (1 : 5000, Santa Cruz Biotechnology). The highly sensitive enhanced chemiluminescence kit, ECL (GE Healthcare, Buckinghamshire, UK), was used for these determinations. Protein band densities were quantified using the ImageJ software (NIH, Scion Corporation, Frederick, MD) and were normalized to β-actin. Final data were expressed as a percent of controls.
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4

Protein Expression Analysis by Immunoblot

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Protein expression was assessed by immunoblot analysis of cell lysates (20–60 μg) in RIPA buffer in the presence of rabbit antibodies to E-cadherin, mouse antibodies to β-catenin, fibronectin, vimentin, β-actin (1:500; Santa Cruz, California, USA); and rabbit antibodies to RB1, GAPDH, E2F1, (1:1000; CST, Danvers, MA). Quantifications were carried out using Scion Image software and normalized to β-actin levels.
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5

Western Blot Analysis of Epithelial Markers

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16HBE14o- and RTE cells incubated for different time periods were collected and lysed. The lysates were centrifuged, denatured, applied to SDS polyacrylamide gels for electrophoresis and transferred to polyvinylidene fluoride membranes. Then, the membranes were blocked with 5% skimmed milk at room temperature for 1 h, and immunoblotting was performed using antibodies against NF-κB p65 (Abcam, MA, United States), NF-κB p-p65 (phospho S536, Abcam), p38 (Abcam), p-p38 (phospho Y182, Abcam), α-SMA (Abcam), vimentin (Abcam), E-cadherin (Abcam), ZO-1 (Abcam), Smad2/3 (Abcam), p-Smad2/3 (Abcam), integrin avβ6 (Abcam), β-actin (Abcam) and a TGF-β1-neutralizing antibody (Sigma). After washing, the membranes were incubated with the appropriate horseradish peroxidase-conjugated secondary antibody at room temperature for 1 h. The bands were visualized via chemiluminescence using an ECL kit (Thermo Scientific) and photographed with a Tanon Multi-Imager. ImageJ (Scion Corporation, Frederick, MD, United States) was used to measure the density of the immunoreactive bands, which was normalized to that of β-actin.
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6

Western Blot Analysis of Protein Targets

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Cells were washed twice with PBS and lysed in cell lysis buffer (150 mM NaCl,10 mM Tris, 0.2 %TritonX-100, 0.3 %nonylphenoxy-polyethoxyethanol-40, 0.2 %mM Na3VO4, protease inhibitor cocktail). The cell lysates were centrifuged and the protein concentration was measured as previously mentioned. Each sample was separated by electrophoresis using 8 % SDS-PAGE gel and analyzed by Western blotting using the following antibodies: primary rabbit anti-human MMP-9 (Novusbio, Colorado, USA), and β-HK2 (Cell signaling, Beverly, Massachusetts, USA), as well as primary mouse anti-human HIF-1α (eBioscience, CA, USA), MMP-2 (Invitrogen, CA, USA), caspase-7 (Novusbio, Colorado, USA), and β-Actin (Sigma-Aldrich Chemical Co., USA). Horseradish peroxidase linked to the corresponding secondary antibody was used at 1:5000 dilution. The membrane was visualized by exposure to Kodak XAR film. For the quantitative analysis, the mean intensity of each band (mean pixel), was compared with β-Actin band using with Scion Image Beta 4.0.2 (Scion Co., MD, U.S.A.) software.
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7

Protein Expression Analysis Protocol

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Equal amounts of protein lysates were separated by SDS-PAGE and transferred onto nitrocellulose membranes. Filters were probed with the following specific primary antibodies: anti-CTSB (Cell signaling, Danvers, MA, USA), MMP-9 (Abcam, Cambridge, MA, USA), β-actin (Sigma, St Louis, MO, USA), PI3K and phosphorylated-PI3K (Cell signaling, Danvers, MA, USA), Akt and phosphorylated-Akt (Cell signaling, Danvers, MA, USA), mTOR, and phosphorylated-mTOR (Cell signaling, Danvers, MA, USA). Blots were then incubated with horseradish peroxidase-conjugated secondary antibody (Pierce, Rockford, IL, USA) and visualized by chemiluminescence. The band density was quantified by densitometry using Scion Image software, and normalized to β-actin levels.
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