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19 protocols using aoc 20

1

Characterization of PEI-Treated Polypropylene Fabrics

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The chemical structure of the PEI treatment of polypropylene fabrics was characterized using a Fourier-transform infrared (FT-IR) spectrophotometer (Nicolet iS5, Thermo Fisher Scientific., Waltham, MA, USA) equipped with an attenuated total reflection accessory (iD7 ATR, Thermo Fisher Scientific., Waltham, MA, USA). The surface morphologies of both untreated and PEI-treated polypropylene fabrics were observed using a field emission scanning electron microscope (FE-SEM, SU8220, Hitachi, Tokyo, Japan). All samples used for FE-SEM were coated with platinum to improve conductivity before the SEM observation. The X-ray photoelectron spectroscopy (XPS) spectra were obtained using an X-ray photoelectron spectrometer (NEXSA, Thermo Fisher Scientific., Waltham, MA, USA) with a monochromatized Al–Kα source and X-ray spot size of 100 μm. The extracted mixture of DFP and DHP after the hydrolysis reaction of DFP was analyzed via GC (GC-2030, Shimadzu, Kyoto, Japan) with an Elite-1 column (dimethylpolysiloxane, 30 m, 0.25 mm, I.D., 0.25 µm, PerkinElmer) and autosampler (AOC-20, Shimadzu, Kyoto, Japan) to achieve a reliable quantitative analysis.
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2

Fatty Acid Profiling of Milk and Chanco Cheese

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Lipids from milk and Chanco-style cheese samples were extracted according to the method proposed by [25 (link)] and the methylation was performed according to the Christie protocol [26 (link)] with modifications by [27 (link)]. Then a gas chromatography system (Shimadzu Scientific Instruments AOC-20, Columbia, MD, USA) equipped with a 100 m column with the following chromatographic conditions was used: after the injection, the oven temperature was set at 110 °C for 4 min and after that it was raised to 160 °C at a rate of 5 °C/min for 10 min, then to 225 °C at a rate of 3 °C/min for 10 more minutes and finally increased to 240 °C at a rate of 3 °C/min. The temperature of the ionization flame was 260 °C, the injection volume 2 μL, the hydrogen flow 25 mL/min, the airflow 400 mL/min and the flow of nitrogen that makes up the gas was 40 mL/min. The fatty acid peaks in the gas chromatograph were identified using standardization methyl esters of fatty acids (FAME, Supelco 37 Component FAME mix, Bellefonte, PA, USA). Retention times were compared with those from similar studies focused on Chanco-style cheese FA profile [15 (link),19 (link)].
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3

Quantitative Analysis of Intracellular Lipids

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Total intracellular lipid contents were estimated as total fatty acids. Accumulated lipids were extracted from lyophilized cells using a hydrochloric acid-catalyzed direct methylation method [31 (link)]. In brief, after cultivation, the centrifuged cells were lyophilized and weighed, dissolved in toluene and methanol, and directly transmethylated with 8% (v/v) methanolic HCl at 100°C for 1 h. The resultant fatty acid methyl esters were extracted with n-hexane and analyzed using a gas chromatograph (GC-2010 Plus; Shimadzu, Kyoto, Japan) equipped with a flame ionization detector (FID) and an autosampler (AOC20; Shimadzu). A TC-17 capillary column (GL Science, Tokyo, Japan) was used. The elution temperature commenced at 165°C for 2 min and then increased by 5°C/min to 180°C, followed by a hold for 5 min, an increase at 5°C/min to 240°C, and an additional hold for 3 min. Helium at 2.0 mL/min served as the carrier gas, and nitrogen as the make-up gas. The injector temperature was 250°C and the detector temperature was 260°C, with a split ratio of 50:1. Major peaks were identified by their retention times using standards obtained from Sigma-Aldrich (St. Louis, MO, USA). Heptadecanoic acid (C17:0) served as an internal standard for the determination of fatty acid concentrations.
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4

Quantifying Intracellular Lipid Content

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Total intracellular lipid was estimated as total fatty acids. The accumulated lipid of the yeast strain was extracted from the lyophilized cells by a hydrochloric acid-catalyzed direct methylation method (Ichihara and Fukubayashi 2010 (link)). In brief, after cultivation, the centrifuged cells were lyophilized and weighed. The cells were suspended in toluene and methanol, then directly transmethylated with 8 % methanolic HCl at 100 °C for 1 h. The resultant fatty acid methyl esters were extracted with n-hexane and analyzed using a gas chromatograph (GC-2010 Plus; Shimadzu, Kyoto, Japan) equipped with a flame ionization detector (FID) and an autosampler (AOC20; Shimadzu). A TC-17 capillary column (GL Science, Tokyo, Japan) was used. Heptadecanoic acid (C17: 0) was used as an internal standard for the determination of fatty acid concentrations.
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5

Quantification of Glycerol and 1,3-PDO

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Culture supernatants were centrifuged (20,000×g, 10 min) and filtered using Minisart RC4 (Sartorius; Goettingen, Germany). Concentrations of glycerol and 1,3-PDO in filtered samples were determined using a high-performance liquid chromatograph (LC-20AD, Shimadzu; Kyoto, Japan) equipped with an autosampler (AOC-20; Shimadzu), a SUGAR SP-G guard column (Shodex; Tokyo, Japan), a SUGAR SP0810 column (Shodex), and a refractive index detector (RID-10A; Shimadzu). Operating conditions were as follows: injection volume, 5 µL; mobile phase, MilliQ water; flow rate, 1.0 mL/min in isocratic mode; column temperature, 80 °C.
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6

GC-MS Analysis of Short-Chain Fatty Acids

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The standards and samples were analysed on a GC-MS (GC-MS-QP2010 Ultra) fitted with a AOC-20s Shimadzu autosampler and a Shimadzu AOC-20i auto-injector with a polar column (Agilent J&W GC, 30m, 0.250 diameters (mm), film 0.25 (μm) temperature limits form 40 °C–260 °C).
SCFAs were determined by injecting a 1 μl sample at 250 °C with helium (1.97 ml/min, 5.0, Coregas, Australia) as the carrier gas. The injection mode had a 5.0 split. The pressure was maintained at 143.3 kPa and a helium flow of 103.4 ml/min. The mass spectrometer operated in the electron ionization mode at 0.2kV, source temperature was 220 °C, and the scan mode was between 33 to 150m/z.
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7

Quantitative GCMS Analysis of Fatty Acids

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The Supelco 37 component FAME Mix (Sigma-Aldrich Corp., St. Louis, MO, USA) served as the standard during free fatty acid analysis by means of gas chromatography-mass spectrometry (GCMS). We used a gas chromatograph (GC-2010Plus), a mass spectrometer (GCMS-QP2010Ultra), a GCMS auto-sampler (AOC-20s), a GCMS auto-injector (AOC-20i), and GCMSsolution software (all from Shimadzu Corp., Kyoto, Japan). The extract solution was fractionated in terms of free fatty acids using solid phase cartridges. After methyl esterification, each fatty acid was analyzed (via GCMS) as its fatty acid methyl ester. The mass range was mass-to-charge ratio (m/z) 33–450. Saturated and branched-chain fatty acids, monounsaturated fatty acids, and polyunsaturated fatty acids were measured using mass spectrum base peaks (m/z peaks) of 74, 55 and 81, respectively, in the mass chromatogram.
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8

Fatty Acid Profiling of Coppa Piacentina

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The preparation of the fatty acid methyl esters (FAME) was conducted on approximately 0.2 g of minced Coppa Piacentina samples belonging to different ripening times (i.e., T0, T60, T90, T180, and T240) according to the direct method described by O’Fallon et al. [39 (link)]. The FAME were analyzed using a gas chromatograph (model 2025, Shimadzu Corporation, Kyoto, Japan) equipped with an auto-sampler (model AOC-20s, Shimadzu), a flame ionization detector, and a CP-Select CB capillary column for FAME (100 m × 0.25 mm i.d.; 0.25 µm film thickness; Chrompack, Varian, Inc., Palo Alto, CA, USA). The injection volume was 1 mL in split mode (split ratio 30:1) and hydrogen was used as carrier gas at a constant flow of 1.5 mL/min. The injector and detector temperatures were set at 250 °C. The oven temperature program was set as follows: 60 °C for 2 min, from 60 to 170 °C at 10 °C/min for 35 min, and from 170 to 240 °C at 4 °C/min for 9.5 min. The FAME were identified by comparison with the retention times of external standards (Supelco 37 component FAME mix, PUFA-3 menhaden oil, conjugated octadecadienoic acid; Sigma Chemical Co, St. Louis, MO, USA). Data were expressed as a percentage of total fatty acids, calculated with peak areas corrected by factors according to the AOAC 963.22 method [35 ].
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9

GC-MS Analysis of Complex Mixtures

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The GC-MS analysis was performed using a Shimadzu GC-201 with auto-injector AOC-20i, autosampler AOC-20s, and a gas chromatograph equipped with a QP2010ultra mass-selective detector. A fused-silica capillary column DB-5MS (0.25 mm, 30 mm, 0.25 mm) was employed for screening, with a maximum temperature capacity of 325°C. The structure was confirmed using electron impact mass spectra (EI spectra). 70 eV EI ionization was utilized with a 1.2 kv electron multiplier setup in full scan operation mode (m/z = 50 to 350) for peak detection and quantification.
The mass-selective detector was auto-tuned using perfluorotributylamine (PFTBA) with mass m/z 69, 219, and 502. After the injection, the chromatograph was set to split injection system mode with a purge flow of 3.0 ml/min. The injection volume was 1.0 l, with a split ratio of 10:1. At a flow rate of 1.0 ml/min, highly pure helium gas was used as a carrier gas. The injector was heated to 250°C, while the interface was heated to 290°C. The temperature of the column was initially fixed at 100°C. The temperature was maintained at 100°C for 0.5 mins after injection, then increased at a rate of 24°C/min to 280°C for 3 mins, for a total run time of 11 mins [44 ].
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10

GC-MS Untargeted Metabolite Analysis

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Following derivatization, the injection was set at Split Mode, with a split ratio of 5 and 0.2 μL injection volumes. The GC–MS analysis for untargeted metabolites consisted of a Shimadzu Gas chromatogram (GC-2010 plus) coupled with a mass spectrometer (TQ 8050), and an auto-sampler (AOC-20s) and auto-injector (AOC-20i) was used. For analysis, helium carrier gas (flow rate 1 mL min−1) and SH-Rxi-5Sil MS capillary column (30 m × 0.25 μm, 0.25 mm) (Restek Corporation, Bellefonte, PA, USA) were used. The system was set at 80 °C isothermal heating (2 min), followed by a ramp rate of 5 °C min−1 to 250 °C, 2 min withhold, and a 10 °C min−1 final ramp with 24 min withhold time. The total run time for GC–MS was 68 min with 4.5 min of solvent delay [27 (link)]. The GC–MS solution software Version 4.45 SP 1 was applied for chromatogram integration and analysis of mass spectra. The derivatized metabolites were identified using NIST14s and the WILEY8 spectral library.
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