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System 2 software

Manufactured by Beckman Coulter
Sourced in United States

System II software is a data analysis and management software for Beckman Coulter lab equipment. It facilitates the collection, processing, and storage of data generated by Beckman Coulter instruments.

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26 protocols using system 2 software

1

Flow Cytometry Analysis of Immune Cells

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After viability determination of harvested lymphocytes from each group using 0.04% trypan blue (viability > 90%) and adjusted cell concentration to 1 × 106 cells/ml in PBS containing 2% FBS, the cells were incubated with surface markers including phycoerythrin (PE)-labeled anti-mouse CD3, Allophycocyanin (APC)-labeled anti-mouse CD4 and fluorescein isothiocyanate (FITC)-labeled anti-mouse CD8 (eBioscience) at 4°C for 30 min in the dark. Followed by washed by 2 ml PBS and then fixed with FACScan buffer (PBS containing 1% FCS and 0.1% Sodium azide) and 2% paraformaldehyde, the cultures were analyzed of fluorescence profiles on a FACScan flow cytometer (BD Bio-sciences) by SYSTEM II software (Coulter).
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2

Quantifying T cell subsets by flow cytometry

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The concentration of the purified splenocytes were adjusted into 1× 105 cells/mL. Then the phycoerythrin (PE)-labeled anti-mouse CD3 (eBioscience) (5 μg/mL), Allophycocyanin (APC)-labeled anti-mouse CD4 (eBioscience) (5 μg/mL) and fluorescein isothiocyanate (FITC)-labeled anti-mouse CD8 (eBioscience) (5 μg/mL) antibodies were used to stain the T cell subclasses (CD4+ and CD8+) for 30 min at 4 °C. After washing by PBS, the cultures were fixed with FACScan buffer (1% FCS and 0.1% Sodium azide in PBS) and 2% paraformaldehyde. The T cell subclasses were measured for fluorescence profiles on a FACScan flow cytometer (BD Bio-sciences) and analyzed by SYSTEM II software (Coulter).
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3

Lymphocyte Proliferation and Flow Cytometry

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Spleens of three mice each group were aseptically removed and the single-cell suspensions were prepared for lymphocyte proliferation assay as previously described (23 (link)). Briefly, the cells were re-suspended in RPMI 1640 medium (Hyclone, Logan, USA) supplemented with 10% fetal bovine serum (FBS) (Invitrogen), followed by counted with 0.04% trypan blue (Bio-Rad, California, USA), plated in 96-well costar plates (5 × 105 cells/well) and incubated with TLA (10 μg/ml), concanavalin A (ConA, 5 μg/ml, Sigma, Missouri, USA) or medium alone at 37 oC in an atmosphere of 5% CO2/air. Lymphocyte proliferation evaluated by stimulation index (SI) was determined by 3-(4,5-dimethylthylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT, 5 mg/ml, Sigma). SI was calculated as the ratio of OD570 value of wells containing stimulus (TLA or ConA) compared with the medium (OD570M).
For flow cytometry assay, 1 × 105 cells were incubated with PE anti-mouse CD3e, APC anti-mouse CD4 and/or FITC anti-mouse CD8a (eBioscience, San Diego, USA) at 4 °C for 30 min in dark followed by washed with 2 ml of PBS (pH 7.4), fixed by FACScan buffer and blocked with 2% paraformaldehyde (17 (link)). Data was collected using a FACScan flow cytometer (BD Bio-sciences, USA) and the SYSTEM II software (Coulter).
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4

Splenic T Cell Phenotyping by Flow Cytometry

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By flow cytomety analysis, the percentage of CD4+ and CD8+ T cell in spleen were determined. The cell concentration was adjusted to 1 × 106 cells/ml in PBS containing 2% FBS. After incubation with FITC-conjugated anti-mouse CD4+ monoclonal antibody (mAb), PE-conjugated anti-mouse CD3+ mAb and Cy5.5-conjugated anti-mouse CD8+ mAb (eBioscience) at 4 °C for 30 min in the dark. The cultures were washed by 2 mL PBS and the suspensions were analyzed using SYSTEM II software (Coulter) through FACScan flow cytometer (BD Biosciences, San Jose, CA, USA).
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5

Flow Cytometry Analysis of T-Cell Subsets

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The percentage of CD4+ T cells and CD8+ T cells present in the spleens were determined by using flow cytometry according to our previous study [30 (link)]. The CD3, CD4, and CD8 antigens on the surfaces of the T-cell subclasses were stained with the corresponding anti-mouse antibodies (eBioscience) tagged with phycoerythrin (PE), allophycocyanin (APC), and fluorescein isothiocyanate (FITC), respectively. The fluorescence profiles of all the samples were analyzed on a FACScan flow cytometer (BD Biosciences) using the System II Software (Coulter).
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6

Quantifying T-cell Populations in Mice

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The percentages of CD4+ and CD8+ T lymphocytes in the purified splenocytes obtained from the mice after the last immunization were analyzed by flow cytometry. Splenocytes suspensions were prepared as mentioned previously and then stained with fluorochrome-labeled mAbs including PE-CD3, APC-CD4, and FITC-CD8 (eBioscience, United States) at 4°C for 30 min in the dark. After washing with 2 ml PBS, the cultures were fixed with FACScan buffer (PBS containing 1% FBS and 0.1% sodium azide) and 2% paraformaldehyde. The samples were run in a FACScan flow cytometer (BD Bio-sciences, United States) and then were analyzed for fluorescence by SYSTEM II software (Coulter). All samples were run in triplicate independently, which were obtained from three different mice.
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7

Flow Cytometric Analysis of T Cell Subsets

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The percentages of CD4+ and CD8+ T lymphocytes in the purified splenocytes were determined by flow cytometry. The specific antigen epitope of each T subclass was stained with phycoerythrin-labeled anti-mouse CD3 (eBioscience), allophycocyanin-labeled anti-mouse CD4 (eBioscience), and fluorescein isothiocyanate-labeled anti-mouse CD8 (eBioscience) antibodies. The cell suspension was then fixed with FACScan buffer (PBS containing 1% BSA and 0.1% sodium azide) and 2% paraformaldehyde. All samples were analyzed for their fluorescence profiles on a FACScan flow cytometer (BD Biosciences) using System II software (Coulter).
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8

Multicolor Flow Cytometry of Lymphocytes

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Single- and dual-color immunophenotyping of lymphocytes was performed at 48hr as described in our previous studies16 (link),29 (link) with modifications for intracellular staining. Gating strategies included forward and side scatter, single parameter histograms, two-parameter density plots, and back-gating to confirm gating strategies. Antibodies (Abs) used included mouse anti-human monoclonal antibodies (mAbs) (of the IgG1 isotype): fluorescein isothiocyanate (FITC)-conjugated CD3, CD14, CD45RO, CD45RA, CD154, CCR7, IL-2, IL-4, IFN-gamma; phycoerythrin (PE)-conjugated CD8 and CD4-perCP; and the following Simultest (FITC/PE-conjugated) reagents: CD4/CD8, CD3/CD19. All mAbs were purchased from BD Biosciences (San Diego, CA) or R&D Systems (Minneapolis, MN), and titrated to obtain maximum staining efficiency according to manufacturer’s recommendation. Flow cytometric analysis was performed on a Coulter Epics XL/MCL Flow Cytometer using System II software (Coulter, Miami, FL) and CytoComp (Coulter). The total numbers of lymphocytes were calculated from the white blood cell (WBC) count (total lymphocytes/mm3 or percentage total lymphocytes).
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9

Phenotypic Analysis of Splenocytes

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For phenotypic analysis of splenocytes, a single cell suspension was prepared as described above, and 1 × 106 cells in 50 μL were delivered to each tube already containing 10 μL of Allophycocyanin (APC)-labeled anti-mouse CD4, 20 μL of phycoerythrin (PE)-labeled anti-mouse CD8, or 20 μL of fluorescein isothiocyanate (FITC)-labeled anti-mouse CD3 antibodies (all from eBioscience) and incubated at 4 °C for 20 min in the dark. After washing, the cells were fixed with FACScan buffer (PBS containing 1% BSA and 0.1% sodium azide) and 2% paraformaldehyde. The fluorescence profile of each sample (at least 10,000 cells) was analyzed on FACS-Calibur flow cytometer (BD Biosciences) using SYSTEM II software (Coulter).
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10

Flow Cytometric Analysis of T Cells

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Analyses of CD4+ and CD8+ T lymphocytes were performed according to our previous study [25 (link)]. The percentages of CD4+ and CD8+ T lymphocytes were determined using flow cytometry with staining by the surface markers including phycoerythrin- (PE-) labeled anti-mouse CD3 (eBioscience), allophycocyanin- (APC-) labeled anti-mouse CD4 (eBioscience), and fluorescein isothiocyanate- (FITC-) labeled anti-mouse CD8 (eBioscience) antibodies. All the samples were analyzed regarding fluorescence profiles on a FACScan flow cytometer (BD Biosciences) by SYSTEM II software (Coulter).
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