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43 protocols using cd8 apc cy7

1

Immune Cell Profiling by Flow Cytometry

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Antibodies used in the studies are mentioned below:
Anti-mouse: CD3-Pacific Blue, CD4-PE, CD8-APCCy7, CD69-FITC, CD44-FITC, CD62L-APC, IFNγ-APC, IL-17-PECy7, CD11b-APCCy7, CD11c-APC, CD80-FITC, CD86-PerCPCy5.5, CD40-PE, CD4-APC, and CD4-FITC from Biolegend, USA.
Anti-mouse: p38, ph-p38 and β-Actin from Cell Signaling Technology.
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2

Tumor Infiltrating T Cell Analysis

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Mice receiving 5 × 104 4T1 or EMT6 cells were treated with antibodies as descried in the figures. Excised tumors were dissociated as a single cell using the gentleMACS Dissociator (Miltenui Biotec Inc., San Diego, CA, USA) with the mouse Tumor Dissociation kit (Miltenui Biotec) and lymphocytes were enriched on a Ficoll gradient (Sigma-Aldrich). T cells were isolated using Dynabeads untouched mouse T cell kit (Thermo Fisher Scientific). T cells were stained using anti-CD3-PerCP (BioLegend, San Diego, CA, USA), CD4-FITC (eBioscience, San Diego, CA, USA), CD8-APC/Cy7 (BioLegend), CD45.1-PE (BioLegend), and IFNγ-Pacific Blue antibodies. Stained samples were analyzed using a BD FACSCanto II (BD Bioscience) cytometer.
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3

Atovaquone, Cabozantinib, and Nanoparticle Formulation

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Atovaquone (Ato), and cabozantinib (cabo) were purchased from Aladdin Reagent (Shanghai, China), while mPEG (2000)-TK-PLGA (2000) were bought from Ruixi Biotech (Shanxi, China). A cellular puncturing material borneol was purchased from Lanzhou Wotelaisi Biology (Gansu, China). ICG was purchased from Dandong Yichuang Pharmaceutical co., LTD (Dandong, China). FcR blocking reagents, CD11b-PE Vio770 was purchased from Miltenyi Biotec (Köln, Germany). Gr-1-Alexa Fluor 532 was bought from Novus Biological (Colorado, USA). CD11c-BB700 was purchased from BD Pharmingen (New Jersey, USA). CD3-Alexa Fluor 532 was bought from eBioscience (San Diego, USA). CD80-Percp/Cy5.5, F4/80-PE/Dazzle 549, MHC II-APC/Cy7, CD4-PE/Cy5 and CD8-APC/Cy7 were purchased from BioLegend (San Diego, USA). Dulbecco’s modified Eagle’s medium (DMEM), Roswell Park Memorial Institute 1640 (RPMI-1640) growth medium, fetal bovine serum (FBS) and penicillin–streptomycin solution were purchased from Gibco BRL (Maryland, USA).
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4

Multiparametric Flow Cytometry Immunophenotyping

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The BLCs and PBMCs were counted and assessed for viability using trypan blue (Sigma-Aldrich) and compound microscopy to ensure >90% lymphocyte viability. To assess distribution of CD4+ and CD8+ T cells, immune regulation and functionality of CD8+ T cells in HIV infection, cells from the two compartments were subjected to two panels of fluorescently labeled antibodies. Panel 1 (phenotypic panel): Live/dead-amcyan (Life Technologies, Carlsbad, CA, USA), CD3-BV650, CD4-BV711, CD14-APC-Cy7, PD-1-BV711, TIM-3-BV785 (BioLegend, San Diego, CA, USA), and CD8-PE Texas Red (Invitrogen, Carlsbad, CA, USA). Panel 2 (intracellular cytokine staining panel): Live/dead-amcyan (Life Technologies), CD3-Alexa700, CD4-BV711, CD8-APC-Cy7, granzyme b-Alexa647, IFNγ-Dazzle 549 (BioLegend). Panel 2 staining was done after stimulation with PMA/Ionomycin (25/500 ng/mL). Acquisition was performed on BD FACS Aria III. Flowjo v10.5 (Flowjo, LLC) was used for flow cytometry analysis.
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5

Multiparametric Flow Cytometry Panel

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CD8 APC‐Cy7 (#301016, BioLegend), CD3 PE‐Cy7 (#300420, BioLegend), CD3 PerCPCy5.5 (#300430, BioLegend), CD4 PE (#317410, BioLegend), eBioscience™ Fixable Viability Dye eFluor™ 506 (#65‐0866‐18, Thermo), streptavidin Brilliant Blue 515 (#564453, BD), streptavidin Brilliant Violet 421 (#405225, BioLegend), streptavidin Brilliant Violet 711 (#563262, BD), streptavidin Brilliant Violet 786 (#563858, BD), streptavidin APC (#405243, BioLegend), streptavidin PE‐Dazz594 (#405248, BioLegend).
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6

Selective T Cell Depletion for Tumor Studies

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T cell subsets were depleted by intraperitoneally administering 400 μg of depleting antibody twice before prophylactic administration of MC38 TEVs and CT26 tumor challenge. CD4 T cells were depleted with anti-CD4 mAb (Clone GK1.5, Bio X Cell). CD8 T cells were depleted with anti-CD8α (Clone 2.43, Bio X Cell). CD4 and CD8 T cell depletion were confirmed using flow cytometry on the BD FACS CantoII (BD Biosciences) from the mouse spleen, lymph node, and peripheral blood. Antibodies for flow cytometry were CD3-APC (1:200, BioLegend, cat. no. 100236), CD8-APC-Cy7 (1:100, BioLegend, cat. no. 100714), CD4-BV510 (1:100, BioLegend, cat. no. 100449), CD11b-FITC (1:100, BioLegend, cat. no. 101206), CD19-FITC (1:100, BioLegend, cat. no. 115506), Nk1.1-FITC (1:100, BioLegend, cat. no. 108706), and CD45-PE (1:200, BioLegend, cat. no.103106).
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7

Multicolor Flow Cytometry of Brain Myeloid Cells

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BSLs purified from perfused brain tissue of moribund C57BL/6 mice on day 6 post-infection were stained with TCRβ-FITC, CD3ε-PE, CD4-PerCP, CD4-PerCP/Cy5.5, CD8-APC/Cy7, CD11b-APC, CD14-PE/Cy7, and F4/80-Brilliant Violet 421™ antibodies purchased from Biolegend (San Diego, CA) and fixable viability dye eFluor®506 (eBioscience, San Diego, CA). An Amnis® ImageStream®X MKII (Amnis Merck-Millipore, Seattle, WA) equipped with five lasers (355, 405, 488, 561, and 642nm) was used for acquisition. A minimum of 30,000 events were collected at 40X magnification using the INSPIRE® software (Amnis Merck-Millipore, Seattle, WA). Analysis was performed using IDEAS® 6.1 software (Amnis Merck-Millipore, Seattle, WA). Focused events were first gated using the Gradient RMS feature. Singlets were then gated by aggregate discrimination using aspect ratio and area. Analysis was then performed on gated live CD11bhighCD14+F480+TCRβ+CD3εCD4CD8 cells.
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8

Splenocyte Stimulation and Flow Cytometry

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Splenocytes were processed as described in the previous section and stimulated with RBD peptides for 5 hours at 37°C with protein transport inhibitor (Invitrogen) and anti-mouse CD107a-FITC antibody (BioLegend). Cell stimulation cocktail and R10, with protein transport inhibitor, were used as positive and negative controls, respectively. After stimulation, cells were stained with Live/Dead violet (Invitrogen) for viability. Anti-mouse CD4-BV510, CD8-APC-Cy7, CD44-A700, and CD62L-BV711 antibodies were used for surface staining and CD3e-PE-Cy5, IFN-γ-APC, and TNF-α-BV605 (all from BioLegend) were used for intracellular staining. The samples were run on an 18-color LSRII flow cytometer (BD Biosciences) and analyzed by FlowJo software.
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9

Multiparameter Flow Cytometry of PBMCs

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PBMC were stained with the following antibodies: TCRC Pacific Blue, CD4 V500, V follow (Biolegend, UK), MR1 APC (26.5) (Biolegend, UK), CD3 PerCP, CD161 APC, CD8 APC-Cy7, CD19 APC-Cy7 and CD20 Pacific Blue. All antibodies were from BD biosciences unless specified. The samples were stained for 15 minutes at room temperature, processed and then analyzed on a FACS Canto II machine with FACS Diva software evaluation.
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10

Comprehensive Immune Cell Profiling

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We used the following antibodies: CD4-PErCP (100538), CD8-APC/Cy7 (100713), CD69-FITC (104506), CD25-APC (101910), IFNγ-APC (505810), IL17-PE/Cy7 (506922), CD11b-APC/Cy7 (101226), CD11c-APC (117310), CD80-FITC (104706), MHCII-PE (107607), CD3-PacificBlue (100214), CD4-PE (100512), CD4-APC (100516) and CD4-FITC (100510) from Biolegend, USA.
SIRT2 (ab211033), β-actin (ab8227), acH3K18 (ab40888), α-tubulin (ab184613), acetyl-α-tubulin (ab179484), acetyl-NFκB p65 (ab19870), Alexa Fluor 647 (ab150075) and IgG-APC isotype control (ab232814) from Abcam.
ERK1/2 (9102), Phospho-ERK1/2 (9101), p-38 (9212) and phospho-p38 (4511) from Cell Signaling Technology.
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