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Ripa buffer 1

Manufactured by Cell Signaling Technology
Sourced in United States

RIPA buffer (1×) is a general-purpose cell lysis and extraction buffer used to solubilize proteins from cells and tissues. It contains a combination of ionic and non-ionic detergents to disrupt cell membranes and release intracellular proteins.

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5 protocols using ripa buffer 1

1

Analysis of COMP-2 and NF-kB Expression

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Western blotting (WB) was performed to analyse protein expression of COMP-2 and NF-kB as key biomarkers of inflammation. Intracellular proteins were obtained using Radio-Immunoprecipitation Assay (RIPA buffer) (1×) (Cell Signaling Technology, Danvers, MA, USA) and Bradford method was used to quantify their concentrations. 10% SDS-PAGE was performed to electrophoretically resolve 2 μg of proteins and transfer them to nitrocellulose membrane (GE, Amersham, UK). This latter was blocked with 5% nonfat milk in Tris-buffered saline and 0.05% Tween-20 (TBST) and it was incubated with. primary antibodies (1:500 dilution) anti- COMP-2 and anti-NF-kB (Santacruz Biotechnology, Dallas, TX, USA). Immunoreactive bands, after TBST washing, were revealed using horseradish peroxidase-conjugated secondary antibodies (1:10,000 dilution) (Santacruz Biotechnology, USA). ECL (Millipore, USA) was used to obtain the specific signals. Normalization was performed with respect to Actin (1:500 dilution) housekeeping protein (Santacruz Biotechnology, USA).
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2

Quantifying Chondrocyte Protein Levels

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Western blot analyses were performed following standard procedures. After 10 days of treatment with BC (1% w/v) and CS (1% w/v), chondrocytes were lysed in RIPA buffer (1×) (Cell Signaling Technology). Protein concentration was determined using the Bradford method [Bradford, 1976] and 60 µg intracellular proteins were loaded and resolved using 8% SDS–PAGE. The separated proteins were then transferred to nitrocellulose membrane (Amersham). The membrane was blocked in 5% milk, Tris‐buffered saline and 0.05% Tween‐20. Primary antibodies to detect type II collagen and type I collagen (Abcam) were used at 1:250 dilutions. Immunoreactive bands were detected by chemiluminescence using corresponding horseradish peroxidase‐conjugated secondary antibody (Santacruz Biotechnology; 1:5000 dilutions) and reacted with an ECL system (Chemicon‐Millipore). Protein levels were normalized with respect to the signal obtained with anti actin polyclonal antibody (Santacruz Biotechnology; 1:500 dilutions). The semi‐quantitative analysis of protein levels was carried out by the Gel Doc 2000 UV System and the Gel Doc EZ Imager, using quantity one software (Bio‐Rad Laboratories).
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3

Western Blot Analysis of COMP-2 and NF-κB Proteins

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The cells’ intracellular total protein content was extracted in the radioimmunoprecipitation assay (RIPA buffer) (1×) (Cell Signaling Technology, USA). Protein concentration was determined using the Bradford method (Biorad Laboratories, Milan, Italy) and 5 μg of proteins was separated by means of sodium dodecyl sulfate polyacrylamide gel electrophoresis, transferred onto nitrocellulose membranes (Millipore, Bedford, MA), and blocked with 5% skimmed milk in Tris-buffered saline with Tween 20 (TBST). The membranes were incubated with primary antibodies to detect COMP-2 (Abcam, Cambridge, UK) and NF-κB (Santa Cruz Biotechnology, CA, USA) both used at 1:500 dilutions and incubated overnight at 4 °C. After washing with TBST, immunolabeling bands were detected by the chemiluminescence detection system using corresponding horseradish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, CAUSA), diluted 1:10,000 for 1 h at room temperature and reacted with an ECL system (Merck Millipore, Darmstadt Germany). Protein levels were normalized with respect to the signal obtained with an anti-actin antibody 1:500 dilution (Santa Cruz Biotechnology, CA, USA). The semi-quantitative analyses of protein levels were carried out using the Gel Doc 2000 UV System (Biorad laboratories, Milan, Italy) according to the manufacturer’s protocols and previously reported [32 , 33 (link)].
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4

Cytokine Profiling of dEVs

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dEVs were lysed in RIPA Buffer 1× (9806S, Cell Signaling, Massachusetts, USA) and the 100 μg of dEVs protein was analyzed by a Proteome Profiler Human XL Cytokine Array Kit (ARY022B, R&D Systems, Minnesota, USA) according to the manufacturer’s protocol. Each cytokine was revealed in duplicate on the array plate, and the average of spots was taken for the analysis of each factor expression. The fold change of cytokine productions was calculated over the background using densitometry as measured by ImageJ software.
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5

Characterization of Extracellular Vesicles and Stem Cells

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dEVs and differentiated ADMSCs were incubated with radioimmunoprecipitation assay (RIPA) Buffer 1× (9806S, Cell Signaling, Massachusetts, USA) for 30 min, and centrifuged for 10 min. Proteins were measured by The PierceTM BCA Protein Assay Kit (Pierce, Illinois, USA). dEVs were separated on 10% SDS-PAGE gel and cell proteins were separated on 8%. Subsequently, the gels were transferred onto nitrocellulose membranes. The membranes were blocked with 5% skim milk dissolved Tris-buffered saline with Tween (TBS-T) solution for 1 h at RT. Each membrane was sequentially incubated with the primary antibody of Anti-CD9 antibody (1:200, Santa Cruz Biotechnology, Texas, USA), Anti-CD63 antibody (1:500, Abcam, Cambridge, UK), Anti-CD81 (1:200, Santa Cruz Biotechnology, Texas, USA), Anti-MAP2 antibody (ab5392, 1:500, Abcam, Cambridge, UK), Recombinant Anti-Nestin Antibody (ab105389, 1:200, Abcam, Cambridge, UK), and Mouse anti-GFAP (556327, 1:500, BD Biosciences, New Jersey, USA) at 4 °C overnight. The next day, anti-Mouse IgG, HRP-linked secondary antibody (1:5000, Cell Signaling, Massachusetts, USA) and anti-Rabbit IgG, HRP-linked Antibody (1:5000, Cell Signaling, Massachusetts, USA) were incubated for 1 h. The expressions were detected using Chemi DocTM XRS and Image Lab software (Bio-Rad, California, USA).
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