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Mitochondria fractionation kit

Manufactured by Beyotime
Sourced in China

The Mitochondria Fractionation Kit is a laboratory equipment designed to isolate and purify mitochondria from various cell types or tissues. The kit provides a standardized protocol and necessary reagents to efficiently separate mitochondria from other cellular components, allowing for further analysis and characterization of this organelle.

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7 protocols using mitochondria fractionation kit

1

Mitochondrial Fractionation and Enzyme Assays

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The primary antibodies and their working concentrations used in this study are listed in Supplementary Material Table 1.2.3. The Mitochondria Fractionation Kit (Cat# C3601) was purchased from Beyotime (Biotechnology, China). PDE2 Activity Assay Kit (Cat# ab139460), PKA Kinase Activity Assay Kit (Cat# ab139435), cAMP Assay (Cat# ab65355) and ODQ (Cat# ab120022) were all purchased from Abcam (Abcam, United Kingdom). Go 6983 (Cas# 133053-19-7) inhibitor was from MCE (MCE, USA). The CellTiter 96® Aqueous One Solution Cell Proliferation Assay was purchased from Promega (Cat# G3581, Promega, USA) and 5-ethynyl-2’-deoxyuridine (EdU)-incorporation assay kit was purchased from Ribobio (Cat# C10310, Ribobio, China). Bay 60-7550 (Cat# HY-14992) and H89 (Cat# HY-15979) were purchased from Med Chemexpress (Med Chemexpress, USA).
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2

Isolation of Hippocampal Mitochondria

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Mitochondria of hippocampus were isolated using Mitochondria Fractionation Kit (Beyotime) as previously described (Du et al., 2016 (link)). Briefly, the hippocampus tissues were quickly removed from adult male offspring and placed in chilled isolation media (0.25 M sucrose, 10 mM Tris–HCl buffer, pH 7.4, 1 m MEDTA, and 250 μg BSA/ml). The tissues were minced and washed with the isolation medium, and 10% (w/v) homogenates were ready. Nuclei and cell debris were sedimented by centrifugation at 600 g for 10 min at 4°C and discarded. The supernatant was subjected to centrifugation at 10,000 g for 10 min at 4°C. The resulting mitochondrial pellets were suspended in the isolation medium.
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3

Mitochondria Isolation from Heart Tissues

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The mitochondria were isolated using a Mitochondria Fractionation Kit (Beyotime Biotech, Shanghai, P.R. China) based on a previously reported method.32 (link) The extracted heart tissues were swiftly placed in mannitol/sucrose/HEPES/EGTA (MSHE) buffer containing 0.22 M mannitol, 70 mM sucrose, 0.5 mM ethylene glycol-bis (β-aminoethyl ether)-N, N-tetraacetic acid (EGTA), and 2 mM K-N-(2-hydroxyethyl) piperazine-N’-(2-ethanesulfonic) acid (HEPES), at 4°C. The myocardium samples were subsequently minced into homogenates, which were then centrifuged at 700 rpm for 10 min to remove the debris. Next, the collected supernatant was centrifuged at 1,000 rpm for 10 min. Finally, the mitochondrial pellets were collected for follow-up experimentation.
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4

Mitochondrial Fractionation and Subfractionation

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Mitochondria and cytosol fractions from mouse liver or glutamine-treated HeLa cells or hippocampal slices were isolated using a mitochondria fractionation kit from Beyotime Biotechnology (China) according to manufacturer’s instructions. Mitochondrial proteins and cytosolic proteins were used for Western blotting. Mitochondrial subfractionation assay was performed as previously described (Li et al., 2016 (link); She et al., 2011 (link)). Isolated mitochondria were resuspended in 10 µM KH2PO4 (pH 7.4) for 20 min on ice. An equal volume of iso-osmotic solution (32% sucrose, 30% glycerol, 10 mM MgCl2) was added and spun at 10,000 g and 4°C for 10 min. The supernatant was centrifuged at 15,000 g and 4°C for 1 h; the pellet and supernatant contained outer membrane (OM) and intermembrane space (IMS) proteins. Then, the pellet was resuspended in 10 µM KH2PO4 (pH 7.4) for 20 min on ice, and iso-osmotic solution was added, followed by centrifugation at 15,000 g and 4°C for 1 h; the pellet and supernatant contained inner membrane (IM) and matrix (Mx) proteins.
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5

Isolation and Assessment of Mitochondria

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Isolation of mitochondria was performed using the Mitochondria Fractionation Kit (Beyotime, China). Briefly, mouse lung tissues were quickly removed and placed in beakers containing chilled (4°C) isolation media (0.25M sucrose, 10mM Tris–HCl buffer, pH 7.4, 1mM EDTA and 250μg BSA/ml. The tissues were minced and washed three times with the isolation media to remove adhering blood and 10% (w/v) homogenates were prepared using homogenizer. The nuclei and cell debris were sedimented by centrifugation at 600g for 10min and discarded. The supernatant was subjected to a further centrifugation at 10000g for 10min. Mitochondrial pellets were suspended in the isolation medium. Respiratory control ratio (RCR) was used to assess the quality of isolated mitochondria.
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6

Cardiac Mitochondria Isolation

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Isolation of mitochondria was performed with the Mitochondria Fractionation Kit (Beyotime Biotech, Haimen, China) according to the manufacturer's protocol. Briefly, fresh cardiac tissue was mixed with a mitochondria extraction reagent and stirred in a homogenizer and the suspension was centrifuged at 1000 × g for 5 min. (4°C); the supernatant obtained was centrifuged at 3500 × g for 10 min. (4°C) and the precipitate contained the mitochondrial fraction.
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7

Protein Extraction and Analysis in Liver

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For total protein extraction, liver tissues or cell samples were lysed in RAPI lysis buffer (P0013, Beyotime) containing protease inhibitors (P8340, Sigma) according to the manufacturer’s instructions. Nuclear components were extracted according to Cytoplasmic and Nuclear Protein Extraction Kit (BB-36021, Bestbio). Isolation of mitochondrial proteins was performed using the Mitochondria Fractionation Kit (C3603, Beyotime Inst. Biotech). This study used the antibodies against the following proteins: SHP (PA5-102494, Invitrogene); GAPDH (60004-I-Ig, Proteintech); Sox9 (SC-166505), Bax (sc-7480), Cyt C (sc-13156), Bid (sc-373939) and Caspase-3 p17 (sc-271028) from Santa Cruz.
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