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7 protocols using fluoromount aqueous mounting medium

1

Linezolid-Loaded Nanoparticle Formulation

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Linezolid was purchased from LKT Laboratories (St. Paul, MN); DSPE-mPEG (1,2-Distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000]), cholesterol and DPPE-lissamine rhodamine B (1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) from Avanti Polar Lipids (Alabaster, AL); ), lecithin (from soybean), gentamicin from Sigma-Aldrich (St. Louis, MO); PLGA (poly(D,L-lactic-co-glycolic acid), 50:50 monomer ratio, ester cap, MW 15kDa) from Polyscitech (West Lafayette, IN). Tryptic soy broth (TSB) and agar were supplied by Becton-Dickinson (Cockeysville, MD). Wheat germ agglutinin-Alexa Fluor 633 conjugate for cell plasma membrane labeling and DAPI (4’,6-diamidino-2-phenylindole) as nuclear dye, Fluoromount aqueous mounting medium, HEPES (N-(2-hydroxyethyl)piperazine-N’-2-ethanesulfonic acid) and most solvents used were bought from Thermo-Fisher Scientific (Pittsburg, PA, USA). Triton X-100 was purchased from Bio-Rad (Hercules, CA).
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2

Immunofluorescence Staining of Retinal Tissue

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The tissues were immersed in 4% paraformaldehyde in 0.1 M phosphate buffer (PB; pH 7.4) for 45 min at 4 °C, followed by cryoprotection in graded sucrose solutions (10%, 20%, 30%) and embedded in cryomatrix (Tissue-Tek® OCT Compound, Sakura® Finetek, VWR, 4583, Radnor, PA, USA). Radial sections (14 µm thick) were collected, air-dried, and stored at −20 °C. Retina sections were incubated overnight at 4 °C with the primary antibodies (Table S1) diluted in blocking solution. Fluorescence immunocytochemistry was performed using either IgG Alexa Fluor™ 568 dye-conjugated goat anti-mouse IgG or Alexa Fluor™ 488 dye-conjugated goat anti-rabbit (Table S1). Negative controls were carried out by omitting the primary antibody. DAPI (Vectashield Antifade Mounting Medium with DAPI; Vector Laboratories, H-1200, Peterborough, UK) was used as a nuclear counterstain. Finally, the slides were mounted with Fluoromount Aqueous Mounting Medium (Thermo Fisher Scientific, F4680, Waltham, MA, USA and imaged with the Axio Imager Z.1 ApoTome microscope equipped with a Zeiss Axiocam MRm digital camera (Jena, Germany).
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3

Rifampicin-Loaded Lipid Nanoparticles

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Rifampicin was purchased from Sigma Aldrich (St Louis, MO), DSPE-mPEG (1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000]), cholesterol and DPPE-lissamine rhodamine B (1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) from Avanti Polar Lipids (Alabaster, AL), soybean lecithin, gentamicin from Sigma-Aldrich (St. Louis, MO), and PLGA [poly(D,L-lactic-co-glycolic acid), 50:50 monomer ratio, MW=15 kDa, ester cap] from Polyscitech (West Lafayette, IN). Triton X-100 was bought from Bio-Rad (Hercules, CA). Tryptic soy broth and agar were purchased from Becton-Dickinson (Cockeysville, MD). Wheat germ agglutinin-Alexa Fluor 633 conjugate for cell plasma membrane labeling and DAPI (4′,6-diamidino-2-phenylindole), Fluoromount aqueous mounting medium, and solvents used were purchased from Thermo-Fisher Scientific (Pittsburg, PA, USA).
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4

Nerve Marker Expression Profiling

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Detection of Nlgn2, Nefh and Calca transcripts was performed by fluorescence in situ hybridization. Adult (>8-week-old) animals were killed by asphyxiation followed by cervical dislocation, and individual DRG were rapidly dissected from mice, frozen in dry ice-cooled 2-methylbutane and stored at –80 °C until further processing. The DRG were cryosectioned at a thickness of 20 µm, and RNA was detected using the RNAscope Fluorescent Multiplex Assay (ACD Bio), according to the manufacturer’s protocol. The following probes were used: Mm-Nlgn2 exons 3–5 (made to order, 300031), Mm-Nefh (443671) and Mm-Mrgprd (417921). Sections were mounted in Fluoromount Aqueous Mounting Medium (Thermo Fisher, 00-4958-02) and imaged on a Zeiss LSM 700 confocal microscope.
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5

Immunocytochemical Characterization of Cells

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Cells were fixed with 4% paraformaldehyde (PFA; P6148, Sigma-Aldrich) for 20 min at room temperature (RT). Blocking was performed with blocking solution: 10% Fetal Bovine Serum (FBS) or 5% Goat serum (GS) with 0.2% Triton X 100 in PBS for permeabilization. Cells were then incubated with primary antibodies (anti-SSEA4, CST-4755, Cell Signaling Technology, Danvers, MA, USA; anti-TRA-1-60, ab16288, Abcam, Cambridge, UK; anti-OCT4, sc-5279, Santa-Cruz, Starr County, TX, USA; anti-FMRP, BLG-834601, Biolegend, San Diego, CA, USA; anti-Tuj1, BLG-801201, Biolegend; anti-PAX6, BLG-901301, Biolegend; anti-MAP2, sc-20172, Santa Cruz; anti-SYN1, AB1543, Merck, Darmstadt, Germany; anti-PSD-95, MAB1596, Merck) diluted in blocking solution for 1 h at RT, washed 3 times with PBS, and incubated with secondary antibodies (donkey anti-mouse Alexa Fluor 488, A21202, Thermo Fisher Scientific, Waltham, MA, USA; goat anti-rabbit Alexa Fluor 594, A11012, Thermo Fisher) for another 1 h at RT in the dark, and counterstained with DAPI for nucleus localization (D1306, Thermo Fisher Scientific). Cells were mounted with Fluoromount aqueous mounting medium (00-4958-02, Thermo Fisher Scientific). Bright-field, phase, and fluorescence images of cells were obtained using an Olympus IX51 inverted light microscope (Olympus, Tokyo, Japan).
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6

Inhibition of ALDH1A1 in Cell Lysis

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The ALDH1A1 inhibitor CM037 was from ChemDiv Inc. CM037 was dissolved in DMSO (10 mM). CelLytic MT Cell Lysis Reagent, goat serum and Eukitt quick-hardening mounting medium for microscopy, 3 kDa FITC-Dextran, ARA-C and DAPI were from Merck KGaA. Fluoromount aqueous mounting medium was from Thermo Fisher Scientific, Inc. Lentiviral particles were from OriGene Technologies, Inc. Matrix Matrigel (growth factors and phenol red-free) was from Becton Dickinson. Anti-IL-8 antibody from R&D Systems (cat. no. MAB208). Tissue-Tek O.C.T. was from Sakura. Retinoic acid and pan-RAR antagonist (cat. no. AGN 193109) were from Tocris Bioscience.
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7

Immunocytochemistry Protocol for Cell Imaging

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Cells grown on Geltrex-coated 13 mm glass cover slips were fixed with 4% paraformaldehyde (PFA; Cat No. P6148, Sigma-Aldrich, St. Louis, MO, USA) for 20 min at room temperature (RT). Blocking was performed with blocking solution, 10% FBS with 0.2% Triton X 100 in PBS for permeabilization. Cells were then incubated with primary antibody diluted in blocking solution for 1 h at RT, washed 3 times with PBS and incubated with secondary antibodies for another hour at RT; they were then and counterstained with DAPI for nucleus localization (Cat No. D1306, Thermo Fisher Scientific). Cells were mounted with Fluoromount aqueous mounting medium (Cat No. 00-4958-02, Thermo Fisher Scientific). The antibodies used for the immunostaining are listed in Table 1. Bright-field, phase, and fluorescence images of cells were obtained using an Olympus IX51 inverted light microscope (Japan).
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