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19 protocols using ab20737

1

Immunofluorescence Imaging of Cells in Chips

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Immunofluorescence microscopic imaging was carried out using the following steps: the apical and basal channels of the chips were gently washed with PBS and fixed with 4% paraformaldehyde (Electron Microscopy Sciences, 157-4) in PBS for 30 min, then washed twice with PBS and kept at 4 °C. The fixed samples were sectioned to 150–250 µm sections using a vibratome (Leica), and then permeabilized and blocked with 0.1% Triton X-100 solution and 10% donkey serum in PBS for 30 min at room temperature. Then primary antibody (Apo-B; Abcam, ab20737) was added (1:100 in 1.5% BSA/PBS solution) and the samples were incubated overnight at 4 °C, followed by multiple PBS washes. Cells were then incubated with secondary fluorescent antibody (Invitrogen, SA5-10038) and phalloidin (Invitrogen, A12380">A12380) at room temperature for 60 min and washed with PBS; nuclei were co-stained with Hoechst 33342 (Sigma, 14533). Microscopy was performed with a laser scanning confocal microscope (Leica SP5 X MP DMI-6000 or Zeiss TIRF/LSM 710).
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2

Immunodepletion of Lipoproteins from EVs

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Immunodepletion of lipoprotein particles from the EV fractions was performed using antibodies against lipoproteins and Protein A-conjugated magnetic beads (Dynabeads, Invitrogen). Protein A beads were washed with 0.001% Tween 20 containing PBS supplemented with 0.1% bovine serum albumin (BSA), and incubated overnight with antibodies against Apolipoprotein A1 (ApoA1) (ab227455, rabbit polyclonal, Abcam), and Apolipoprotein B (ApoB) (ab20737, rabbit polyclonal, Abcam) at 4°C. The beads were then incubated overnight with the EV fractions at 4°C. After the incubation, the supernatants and the beads were separated by DynaMag-2 magnet, and analyzed by Western blotting and nanoparticle tracking analysis.
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3

Cholesterol and Lipid Uptake Modulation

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Five different conditions were studied: (1) control/vehicle (PBS only, 10 μL) – termed “PBS”; (2) 16:0 lysophosphatidylcholine (LPC, Avanti Polar Lipids) in PBS (10 μl of 6 μmol/ mL) – termed “LPC”; (3) a 1:1 mixture of LPC and cholesterol (Sigma) in PBS (10 μl of 6 μmol/ mL) – termed “Chol”; (4) a 1:1 mixture of LPC and ergosterol (Sigma) in PBS (10 μl of 6 μmol/ mL) – termed “Erg”; and (5) a 1:1 mixture of LPC and cholesteryl hemisuccinate (CHS, Sigma) in PBS (10 μl of 6 μmol/ mL) – termed “CHS”. For each of these five conditions: 2 wells were exposed only the condition stated; 2 wells were pre-incubated for 24 h with rabbit anti-apolipoprotein B antibodies (anti-ApoB, 1 μL, abcam ab20737), blocking the receptor – termed “-ApoB”; 2 wells were also exposed to low density lipoprotein (LDL, 20 μg/ mL, Sigma) – termed “LDL”; 2 wells were also exposed to lipopolysaccharide (LPS, 0.4 μg/ mL, Sigma) – termed “LPS”; 2 wells were cultured in the presence of 10% FBS – termed “Ser”. Cells were incubated in each of these 25 different conditions for 24 h prior to either: fixing and staining for imaging; or performing the MTT viability assay.
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4

Western Blot Analysis of ApoB in Fasted Mice

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Two microliters of plasma from 12 h-fasted mice fed a WTD for 9 weeks were diluted with RIPA buffer (1:5, v:v) under reducing and denaturing conditions, separated by 4.5% SDS-polyacrylamide gel electrophoresis, and transferred to a nitrocellulose membrane. The blot was incubated with rabbit polyclonal anti-ApoB antibody (1:1,000, ab20737, Abcam, Cambridge, UK) and HRP-conjugated goat anti-rabbit (1:5,000) (Dako, Glostrup, Denmark) was visualized by enhanced chemiluminescence detection (Clarity Western ECL substrate; Bio-Rad) on a ChemiDoc MP imaging system (Bio-Rad, Hercules, CA) and quan-tified using ImageJ software.
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5

Immunoblot Analysis of Lipid Markers

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We performed immunoblots of 3 to 7 samples randomly chosen from each experimental cohort with antibodies against LDLR (ab30532) and ApoB (ab20737) from Abcam; ApoE (K23100R) from BioDesign; ApoAI (K23500R) from Meridian Life Science and α-tubulin (T5168) from Sigma-Aldrich.
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6

Proteomic Profiling of Extracellular Vesicles

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Equal amounts of total proteins of the EV fractions were separated using 5% to 20% gradient sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels (ATTO), and transferred to PVDF membranes (Bio-Rad). The membranes were incubated overnight with the following primary antibodies at 4°C: anti-CD63 (10628D, mouse monoclonal, Thermo Fisher Scientific), anti-CD9 (CBL162, mouse monoclonal, Merck Millipore), anti-Hsc70 (ADI-SPA-819, rabbit polyclonal, Enzo Life Sciences), anti-GPIIb (LS-B13882, rabbit polyclonal, LifeSpan Biosciences), anti-GPIIIa (R30709, rabbit polyclonal, NSJ Bioreagents), anti-ApoB (ab20737, rabbit polyclonal, Abcam), and anti-ApoA1 (ab227455, rabbit polyclonal, Abcam) for both mouse and human samples, anti-PF4 (MAB595, rat monoclonal, R&D systems) for mouse samples, and anti-PF4 (ab129183, rabbit monoclonal, Abcam) for human samples. As secondary antibodies, horseradish peroxidase (HRP)-conjugated immunoglobulins were used. The HRP signal was visualized by ImmunoStar Zeta/LD (Wako), and captured using an Amersham Imager 600 system (Cytiva). Acquired images were analyzed using ImageJ software (NIH).
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7

Western Blot Analysis of ApoB in Fasted Mice

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Two microliters of plasma from 12 h-fasted mice fed a WTD for 9 weeks were diluted with RIPA buffer (1:5, v:v) under reducing and denaturing conditions, separated by 4.5% SDS-polyacrylamide gel electrophoresis, and transferred to a nitrocellulose membrane. The blot was incubated with rabbit polyclonal anti-ApoB antibody (1:1,000, ab20737, Abcam, Cambridge, UK) and HRP-conjugated goat anti-rabbit (1:5,000) (Dako, Glostrup, Denmark) was visualized by enhanced chemiluminescence detection (Clarity Western ECL substrate; Bio-Rad) on a ChemiDoc MP imaging system (Bio-Rad, Hercules, CA) and quan-tified using ImageJ software.
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8

Immunohistochemical Analysis of Mouse Aorta

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Serial sections (5 μm thick) of paraffin‐embedded mouse aortas were placed on poly‐L‐lysine‐coated slides, deparaffinized and treated with H2O2 for suppression of endogenous peroxidase activity. Immunohistochemical analysis was performed with the avidin‐biotin immunoperoxidase technique, as previously described 56. Samples were analysed for Apo B (rabbit‐polyclonal anti‐apolipoprotein B; dilution 1:100; Abcam, ab20737, Abcam: Cambridge, UK), LRP5 (rabbit‐polyclonal anti‐LRP5; dilution 1:50; Abcam, ab38311) and MAC387 that is a marker for tissue infiltrating monocytes 57, 58 [anti‐Macrophage antibody (MAC387); dilution 1:100; Abcam, ab22506]. Images were captured and digitized using a Nicon Eclipse 80i microscope and a Retiga 1330i Fast camera. Controls without primary antibodies were run with each set of specimens and showed no labelling background.
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9

Western Blot Analysis of Cellular Proteins

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The total protein of tissues and cells was extracted by high-efficiency RIPA lysis buffer (R0010, Solarbio). After centrifugation at 15,000 rpm/min for 15 min and lysis at 4°C for 15 min, the supernatant was harvested, and the protein concentration was evaluated employing the bicinchoninic acid kit (20201ES76, Yeasen Biotechnology, Shanghai, China). Following separation utilizing polyacrylamide gel electrophoresis, the protein was transferred onto PVDF membranes which were sealed at 5% BSA for 1 h at ambient temperature and probed with the diluted primary antirabbit antibodies (all from Abcam) against Sesn2 (ab178518, 1: 10000), Srx1 (ab203613, 1: 10000), Trx1 (ab273877, 1: 10000), Beclin-1 (ab210498, 1: 10000), LC3A/B (ab128025, 1: 1000), Ki67 (ab92742, 1: 10000), Aggrecan (ab3778, 1: 10000), MMP3 (ab39012, 1: 10000), GRP94 (ab238126, 1: 10000), APOB (ab20737, 1: 10000), and GAPDH (ab8245, 1: 10000) overnight at 4°C. The next day, the membrane was reprobed with HRP-labeled goat antirabbit IgG (ab205718, 1: 20000, Abcam) for 1 h at ambient temperature. The developing solution was added for development. ImageJ 1.48 software (National Institutes of Health) was employed for protein quantitative analysis, and protein quantitative analysis was implemented with the gray value ratio of each protein to the internal reference GAPDH.
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10

Quantification of Aldosterone, CRP, and Apolipoproteins

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To quantify aldosterone and C-reactive protein (CRP) in plasma, an aldosterone ELISA kit (ab136933) and rat CRP ELISA kit (PTX1, ab108827), respectively, were obtained from Abcam (Cambridge, UK). Appropriately diluted plasma samples were reacted using the kit in according to the manufacturer’s suggestion.
The composition of apolipoprotein/lipoprotein were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) with an exact amount of protein loaded in the gel (5 µg of total protein per lane) from individual HDL3, and the levels of apolipoprotein expression were measured by immunodetection. Anti-human apoA-I antibody (ab7613) and anti-apo-B antibody (ab20737) were ordered from Abcam (Cambridge, UK). Relative band intensity (BI) was compared through band scanning with Chemi-Doc® XRS+ (Bio-Rad, Hercules, CA, USA) using Image Lab software (Version 5.2, Bio-Rad, Hercules, CA, USA). Blot images are imported into the Quantity One software and then contrast was adjusted in a way so that the bands were fully noticeable on the blot image. The area around the band was chosen; additionally, the background intensity was deducted from the blot image. The appropriate bands were used to calculate band intensities and exported to excel for analysis.
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